| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,056,869 – 20,056,989 |
| Length | 120 |
| Max. P | 0.550220 |
| Location | 20,056,869 – 20,056,989 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.17 |
| Mean single sequence MFE | -17.67 |
| Consensus MFE | -15.00 |
| Energy contribution | -15.50 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20056869 120 - 27905053 AUUCCAUUCCAUUUCCCCUGUCCACUGAUUCACAUUUUUACACCGAAAAUGAUUCAGGUGCAAGACGAAACAAAAAAAUUGCACUAGAUCACUUAAUUUCCCCACGUUUCGUAUCGCCAA ........................((((....(((((((.....)))))))..))))(.((...(((((((....((((((............))))))......)))))))...))).. ( -15.40) >DroSec_CAF1 45335 115 - 1 AUU-----CCAAUUCCCCUGUCCACUGAUUCACAUUUUUACACCGAAAAUGGUUCAGGUGCAGGCCGAAACAAAAAAAUUGCACUAAAUCACUCAAUUUCCCCACGUUUCGUAUCGCCAA ...-----........((((..(.((((....(((((((.....)))))))..)))))..)))).((((((....((((((............))))))......))))))......... ( -21.40) >DroSim_CAF1 47601 115 - 1 AUU-----CCAAUUCCCCUGUCCACUGAUUCACAUUUUUACACCGAAAAUGGUUCAGGUGCAAGACGAAACAAAAAAAUUGCACUAAAUCACUCAAUUUCCCCACGUUUCGUAUCGCCAA ...-----................((((....(((((((.....)))))))..))))(.((...(((((((....((((((............))))))......)))))))...))).. ( -17.90) >DroYak_CAF1 48376 120 - 1 AUUCCAUUCCAUUUCCCCUGUCCACUGAUUCACAUUUUUACACCGAAAAUGGUUCAGGUGUAAAGCGAAACAAAAAAAUCACACUAAAUCACUCAAUUUCCCUACGUUUCGUAUCGCCAA .........................(((....(((((((.....)))))))..)))((((....(((((((..................................)))))))..)))).. ( -15.98) >consensus AUU_____CCAAUUCCCCUGUCCACUGAUUCACAUUUUUACACCGAAAAUGGUUCAGGUGCAAGACGAAACAAAAAAAUUGCACUAAAUCACUCAAUUUCCCCACGUUUCGUAUCGCCAA .........................(((....(((((((.....)))))))..)))((((....(((((((....((((((............))))))......)))))))..)))).. (-15.00 = -15.50 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:34 2006