Locus 7503

Sequence ID 3R_DroMel_CAF1
Location 20,055,278 – 20,055,398
Length 120
Max. P 0.903697
window12119

overview

Window 9

Location 20,055,278 – 20,055,398
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.08
Mean single sequence MFE -37.32
Consensus MFE -32.96
Energy contribution -32.44
Covariance contribution -0.52
Combinations/Pair 1.22
Mean z-score -1.52
Structure conservation index 0.88
SVM decision value 1.03
SVM RNA-class probability 0.903697
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20055278 120 - 27905053
GACACCGGCCAAUCAACUCAACCAGGUGGUACUGUGGGACAAGAUUAUCCUGCGCGGCGACAAUGCCGUAUUGGACUUCAAGAACAUGAACACCAAGUACUACUUCUGGGACGACGGGAA
........((..((..((((...(((((((((((..(((........)))..)(((((......)))))..(((..((((......))))..))))))))))))).))))..))..)).. ( -36.40)
>DroSec_CAF1 43743 120 - 1
GACACCGUCUAAUCAGCUCAACCAGGUGGUACUGUGGGACAAGAUCAUCCUGCGCGGCGAGAAUGCCGUGCUGGACUUUAAGAACAUGAACACCAAGUACUACUUCUGGGACGACGGCAA
....(((((...((((.......((((((((((.(((((.....)).(((.(((((((......))))))).))).................)))))))))))))))))...)))))... ( -42.01)
>DroSim_CAF1 43500 120 - 1
GACACCGUCUAAUCAGCUCAACCAGGUGGUACUGUGGGACAAGAUCAUCCUGCGCGGCGAGAAUGCCGUGCUGGACUUCAAGAACAUGAACACCAAGUACUACUUCUGGGACGACGGCAA
....(((((...((((.......((((((((((.(((..........(((.(((((((......))))))).))).((((......))))..)))))))))))))))))...)))))... ( -43.81)
>DroWil_CAF1 42461 120 - 1
GACACCAACGAAUCAAUUAAAUCAAGUCGUUCUUUGGGACAAGAUCAUCUUGCGUGGCGAAAAUGCCGUGUUGGACUUCAAGAACAUGAAUACCAAAUACUACUUCUGGGACGAUGGCAA
.........................((((((((..(((.((((.....))))...(((......)))(((((((..((((......))))..)).)))))..)))..))))))))..... ( -24.50)
>DroYak_CAF1 46790 120 - 1
GACACCGGCCAAUCAACUCAACCAGGUGGUACUGUGGGACAAGAUCAUCCUGCGCGGCGAGAAUGCCGUGCUGGACUUCAAGAACAUGAACACCAAGUACUAUUUCUGGGACGACGGCAA
.......(((..((..((((...((((((((((.(((..........(((.(((((((......))))))).))).((((......))))..))))))))))))).))))..)).))).. ( -39.90)
>consensus
GACACCGGCCAAUCAACUCAACCAGGUGGUACUGUGGGACAAGAUCAUCCUGCGCGGCGAGAAUGCCGUGCUGGACUUCAAGAACAUGAACACCAAGUACUACUUCUGGGACGACGGCAA
....(((.....((..((((...((((((((((.(((..........(((.(((((((......))))))).))).((((......))))..))))))))))))).))))..)))))... (-32.96 = -32.44 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:32 2006