Locus 7502

Sequence ID 3R_DroMel_CAF1
Location 20,053,085 – 20,053,205
Length 120
Max. P 0.885347
window12118

overview

Window 8

Location 20,053,085 – 20,053,205
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.42
Mean single sequence MFE -32.80
Consensus MFE -24.76
Energy contribution -25.40
Covariance contribution 0.64
Combinations/Pair 1.21
Mean z-score -2.15
Structure conservation index 0.75
SVM decision value 0.94
SVM RNA-class probability 0.885347
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20053085 120 + 27905053
CCGGAGAUCAACACGGAGAACUGGCCAAACAAGCUGAAAACACAACUGAUACCCAAAAAAGUGCUGGGUAAAAUUGGCGAACAAUUCCUAAAGGAUGCCAGGAUGGUUGUAUUCCGAUCC
.(((((..((((.((.....(((((.......((..(...((....)).((((((.........))))))...)..)).......(((....))).)))))..))))))..))))).... ( -31.10)
>DroSec_CAF1 41561 120 + 1
CCGAAGAUCAACACGGAGAACUGGCCAAUCAAGCUGAAAACACAGCUGAUACCCAAAAAAGUGCUGGGUAAAAUUGGCGAACAAUUCCUUAAGGAUGCCAGGAUGGUUGUUUUCCGAUCC
.............((((((((.(((((.((.(((((......)))))..((((((.........))))))...((((((......(((....)))))))))))))))))))))))).... ( -37.70)
>DroSim_CAF1 41305 120 + 1
CCGGAGAUUAACACGGAGAACUGGCCAAACAAGCUGAAAACACAGCUGAUACCCAAAACAGUGCUGGGUAAAAUUGGCGAACAAUUCCUUAAGGAUGCCAGGAUGGUUAUUUUCCGAUCC
.((((((.((((.((.....((((((((...(((((......)))))..((((((.........))))))...))))).......(((....)))...)))..)))))).)))))).... ( -36.80)
>DroEre_CAF1 43916 120 + 1
CCGGAGAUCAAGUCGGAGAACUGGCCAAAGAAGCUGAAGACACAAUUGAUAUCCAAAAAAGUGCUAGGUAAAAUUGGCGAACAAUUCCUUAAGGAUGCCAAAAUAGUAGUUUUCCGAUCC
...........(((((((((((((((((....(((..((.(((..(((.....)))....))))).)))....))))).......(((....)))...........)))))))))))).. ( -28.90)
>DroYak_CAF1 44479 120 + 1
CCGGAGAUCAAUUUUGAGAACUGGCCAAAGAAGCUGAAAACACAGUUGAUAUCCAAAAGUGUGCUUGAUAAAAUUGGCGAACAAUUUCUUAAGGAUGUCAAGAUGGUAGUUUUCCGACCC
.((((..(((....)))((((((.(((....(((((......)))))(((((((..(((....)))....((((((.....)))))).....)))))))....))))))))))))).... ( -29.50)
>consensus
CCGGAGAUCAACACGGAGAACUGGCCAAACAAGCUGAAAACACAGCUGAUACCCAAAAAAGUGCUGGGUAAAAUUGGCGAACAAUUCCUUAAGGAUGCCAGGAUGGUUGUUUUCCGAUCC
.............((((((((.(((((....(((((......)))))..((((((.........))))))...((((((......(((....)))))))))..))))))))))))).... (-24.76 = -25.40 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:31 2006