| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,051,959 – 20,052,070 |
| Length | 111 |
| Max. P | 0.543431 |
| Location | 20,051,959 – 20,052,070 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.08 |
| Mean single sequence MFE | -35.09 |
| Consensus MFE | -20.81 |
| Energy contribution | -22.14 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.543431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20051959 111 - 27905053 CCAUCUUCAUACCAAACCUCAAUGCACAACUGGCCACCGCUCAGGCGGUCAACUUCAACGGGCAACAGGCCUUUAUCACGCCCAACGGUCAAAUUCUGCGGGCUCCCCAGA ..............................((((((((((....)))))..........((((................))))...)))))...((((.((....)))))) ( -27.49) >DroVir_CAF1 61151 111 - 1 CCAUCUUUAUACCCAAUCUAAAUGCACAGCUGGCCACUGCGCAGGCAGUCAACAUAAAUGGCCAGCAGGCGUUCAUAACGCCCAACGGCCAGAUAGUGCGGGCGCCACAGG ............((........(((.(((.......))).)))(((.(((..(((...(((((....(((((.....)))))....)))))....)))..))))))...)) ( -35.00) >DroGri_CAF1 50147 111 - 1 CGAUCUUUAUACCCAAUCUGAAUGCCCAGCUGGCGACGGCUCAGGCCGUCAAUAUCAAUGGCCAGCAGGCGUUCAUAACGCCUAAUGGGCAAAUAGUGCGUGCUCCGCAGC .................(((..((((((((((((((((((....)))))).((....)).))))))((((((.....))))))..))))))..)))((((.....)))).. ( -45.30) >DroMoj_CAF1 48808 111 - 1 CCAUCUUUAUACCCAAUCUGAAUGCACAGCUGGCCACGGCCCAGGCGGUGAACAUUAAUGGCCAGCAGGCGUUUAUAACGCCCAAUGGUCAAAUAGUGCGGGCGCCGCAGG ............((...(((...((...)).(((....))))))((((((..(((((.((((((...(((((.....)))))...))))))..)))))....)))))).)) ( -37.20) >DroAna_CAF1 42655 106 - 1 CCAUCUUCAUCCCGAACCUCAAUACCCAGCUGGCCACUGCCCAGCCGGUGAACAUCAACGGCCAGCAGGCCUUCAUUACGCCCAACGGCCAGAUCAUCCGGGCGCC----- ..........((((..............(((((((...(((.....)))(.....)...))))))).((((...............))))........))))....----- ( -29.26) >DroPer_CAF1 44725 111 - 1 CAAUCUUCAUUCCCAACCUGAAUGCACAGCUGGCGACGGCCCAGGCCGUGAACAUCAAUGGACAGCAGGCAUUCAUCACGCCCAACGGGCAGAUCCUGCGGGCUCCACAGG ..((((............(((((((...((((...(((((....)))))...((....))..))))..)))))))....((((...))))))))((((.((...)).)))) ( -36.30) >consensus CCAUCUUCAUACCCAACCUGAAUGCACAGCUGGCCACGGCCCAGGCGGUCAACAUCAAUGGCCAGCAGGCGUUCAUAACGCCCAACGGCCAAAUAGUGCGGGCGCCACAGG ....................(((((.(.((((((((((((....)))))..........))))))).))))))......((((................))))........ (-20.81 = -22.14 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:30 2006