Locus 7500

Sequence ID 3R_DroMel_CAF1
Location 20,051,789 – 20,051,893
Length 104
Max. P 0.667635
window12116

overview

Window 6

Location 20,051,789 – 20,051,893
Length 104
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 99.04
Mean single sequence MFE -19.05
Consensus MFE -18.90
Energy contribution -18.89
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.83
Structure conservation index 0.99
SVM decision value 0.28
SVM RNA-class probability 0.667635
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20051789 104 - 27905053
AAACCCAGCUGAUCACCAUACCCGGCACCAACAUUCAAAUACCCGUCACCAAUCUCAUUCAGCAACAACAGCAGGCACAACAAGUGCACCAGGGUACAGUGCAA
..((((.(((((...........(((..................)))...........)))))...........((((.....))))....))))......... ( -18.82)
>DroSec_CAF1 40252 104 - 1
AAACCCAGCUGAUCACCAUACCCGGCACCAACAUUCAAAUACCCGUCACCAAUCUCAUUCAGCAACAACAGCAGGCACAACAAGUGCACCAGGGUGCAGUGCAA
..((((.(((((...........(((..................)))...........)))))...........((((.....))))....))))......... ( -18.82)
>DroSim_CAF1 39995 104 - 1
AAACCCAGCUGAUCACCAUACCCGGCACCAACAUUCAAAUACCUGUCACCAAUCUCAUUCAGCAACAACAGCAGGCACAACAAGUGCACCAGGGUGCAGUGCAA
..((((.(((((...........((((................))))...........)))))...........((((.....))))....))))......... ( -19.74)
>DroYak_CAF1 43176 104 - 1
AAACCCAGCUGAUCACCAUACCCGGCACCAACAUUCAAAUACCCGUCACCAAUCUCAUUCAGCAACAACAGCAGGCACAACAAGUGCACCAGGGUGCAGUGCAA
..((((.(((((...........(((..................)))...........)))))...........((((.....))))....))))......... ( -18.82)
>consensus
AAACCCAGCUGAUCACCAUACCCGGCACCAACAUUCAAAUACCCGUCACCAAUCUCAUUCAGCAACAACAGCAGGCACAACAAGUGCACCAGGGUGCAGUGCAA
..((((.(((((...........(((..................)))...........)))))...........((((.....))))....))))......... (-18.90 = -18.89 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:29 2006