Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,640,122 – 2,640,242 |
Length | 120 |
Max. P | 0.598062 |
Location | 2,640,122 – 2,640,242 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.50 |
Mean single sequence MFE | -30.12 |
Consensus MFE | -27.10 |
Energy contribution | -26.78 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.12 |
Mean z-score | -1.19 |
Structure conservation index | 0.90 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598062 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2640122 120 - 27905053 GACCGUUUUCCGUUUUACCAAUUGUUUCUUUGCUCAUUUAGUAUGCAAAUGGUUCGAACUAAAACCGGCUACUGACUAAUAAGCAAAUGAGCAGGUGACGGCUAACCAAACUCGCUAGGU ....(((..(((((..(((...(((((.((((((...(((((.......(((((........))))).......)))))..)))))).)))))))))))))..))).............. ( -28.34) >DroSec_CAF1 40238 120 - 1 GACCGUUUUCCGUUUUACCAAUUGUUUCUUUGCUCAUUUAGUAUGCAAAUGGUUCGAACUAAAACCAGCUACUGACUAAUAAGCAAAUGAGCAGGUGACGGCUAACCAAGCUCGCUAGGU .((((((..(((((..(((...(((((.((((((...(((((.......(((((........))))).......)))))..)))))).)))))))))))))..)))..((....)).))) ( -31.14) >DroSim_CAF1 28509 120 - 1 GACCGUUUUCCGUUUUACCAAUUGUUUCUUUGCUCAUUUAGUAUGCAAAUGGUUCGAACUAAAACCGGCUACUGACUAAUAAGCAAAUGAGCAGGUGACGGCUAACCAAGCUCGCUAGGU .((((((..(((((..(((...(((((.((((((...(((((.......(((((........))))).......)))))..)))))).)))))))))))))..)))..((....)).))) ( -30.44) >DroEre_CAF1 31126 120 - 1 CACCGUUUUCCGUUUUACCAAUUGUUUCUAUGCUCAUUUAGUAUGCAAAUGGUUUGAACUAAAACCGGCUACUGACUAAUAGGCACAUGAACAGGUGAGGGCUAACCCAACUCGCUAGGU .(((..........(((((...(((((.(.(((..((((((((.((....(((((......))))).))))))))...))..))).).))))))))))(((....))).........))) ( -28.10) >DroYak_CAF1 21892 120 - 1 GACCGUUUUUCGUUUUACCAAUUGUUUCUUUGCUCAUUUAGUAUGCAAAUGGUUUGAACUAAAACCGGCUGCUGACUAAUAGGCAAAUGAGCAGGUGACGGCUAACCAAACUCGCUAGGU ....(((..(((((..(((...(((((.((((((...(((((..(((..((((((......))))))..)))..)))))..)))))).)))))))))))))..))).............. ( -32.60) >consensus GACCGUUUUCCGUUUUACCAAUUGUUUCUUUGCUCAUUUAGUAUGCAAAUGGUUCGAACUAAAACCGGCUACUGACUAAUAAGCAAAUGAGCAGGUGACGGCUAACCAAACUCGCUAGGU ....(((..(((((..(((...(((((.((((((...(((((.......(((((........))))).......)))))..)))))).)))))))))))))..))).............. (-27.10 = -26.78 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:05 2006