Locus 7499

Sequence ID 3R_DroMel_CAF1
Location 20,045,628 – 20,045,733
Length 105
Max. P 0.788791
window12115

overview

Window 5

Location 20,045,628 – 20,045,733
Length 105
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 71.29
Mean single sequence MFE -29.90
Consensus MFE -17.05
Energy contribution -17.67
Covariance contribution 0.61
Combinations/Pair 1.20
Mean z-score -1.52
Structure conservation index 0.57
SVM decision value 0.58
SVM RNA-class probability 0.788791
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20045628 105 - 27905053
AAGCUAAGAAGUCUUCCCGCAGAGCUCGGCGAGCUCAUCCAGUUGCGGUGAGUUUGUGGGUUGGCAUAGGACAUGAUUUACGUUGUUAAAUCGUAUUUUA-GUCCU-------
..........(((..((((((((.((((.((((((.....)))).)).))))))))))))..)))..(((((.(((..((((.........))))..)))-)))))------- ( -36.50)
>DroSec_CAF1 34080 97 - 1
AAGCUUAGAAGUCUUCCCGCAGAGCUUGGCGAACUCAUCCAGUUGCGGUGAGUUUGGGGACUGGCAUAGAAUAUGAUU--------UAAAACUUAUCUUA-GUCUU-------
..(((.(((.(((.((((((...))....(((((((((((....).))))))))))))))..))).((((......))--------)).......))).)-))...------- ( -23.50)
>DroSim_CAF1 33799 97 - 1
AAGCUAAGAAGUCUUCCCGCAGAGCUCGGCGAACUCAUCCAGUUGCGGUGAGUUUGUGGCCUGGCAUAGAAUAUUAUU--------UAAAUCCUAUCUUA-GUCCU-------
..(((((((.(((...(((((((.((((.((((((.....)))).)).)))))))))))...))).((((......))--------)).......)))))-))...------- ( -27.70)
>DroEre_CAF1 36405 106 - 1
AAGCUAAGAAGUCUGCCCGCAGAGCUUGGCGAGCUCAUCCAGUUGCGGUGAGUUUGUGGGAUGUCAUAGAAAAUAAAGGACACUGUAAACUGUUAUAUUAUAUCCU-------
..((((((...((((....)))).))))))((((((((((....).)))))))))..(((((((.(((..........((((........)))).))).)))))))------- ( -29.70)
>DroYak_CAF1 36979 101 - 1
AAGCUUAGAAGUCUGCCCGCAGAGCUCGGCGAGCUCAUCCAGUUGCGGUGAGUUUGUGGGAUGGCAUAUCUAACUAAUUACGUUGUAAAAUGUUAAAUUAU------------
.((.(((((.(((..((((((((.((((.((((((.....)))).)).))))))))))))..)))...)))))))....(((((....)))))........------------ ( -28.90)
>DroAna_CAF1 36550 94 - 1
AAGCUGCGAAGUCUUCCAGCAGAGCUCGGCGAGCUUAUCCAGCUGCGGUGAGUCC------UGCCGGCG---AGGUUU--------UAGGACUUU-UUAG-GGCUUAUUUAUA
(((((..((((((((((.((((..((((.((((((.....)))).)).))))..)------))).))..---......--------.))))))))-....-)))))....... ( -33.10)
>consensus
AAGCUAAGAAGUCUUCCCGCAGAGCUCGGCGAGCUCAUCCAGUUGCGGUGAGUUUGUGGGAUGGCAUAGAAAAUGAUU________UAAAUCUUAUAUUA_GUCCU_______
..........(((...(((((((.((((.((((((.....)))).)).)))))))))))...)))................................................ (-17.05 = -17.67 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:28 2006