Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,040,642 – 20,040,732 |
Length | 90 |
Max. P | 0.968159 |
Location | 20,040,642 – 20,040,732 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -31.76 |
Consensus MFE | -28.92 |
Energy contribution | -28.92 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.07 |
Mean z-score | -1.76 |
Structure conservation index | 0.91 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.968159 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20040642 90 - 27905053 UCGUGUUGGCUGGGAGUAGCAAUCGGAGUUGUCUCAGCAUCUCGGCGCUGGAAAAUGUCACAGAUUUUCCAUUGGCAGGUUCCGGGCAGA .((.(...(((((((.((((.......)))))))))))..).))((.((((((..(((((..(......)..)))))..))))))))... ( -30.90) >DroSec_CAF1 29162 90 - 1 UCGUGUUGGCUGGGAGUAGCAAUCGGAGUUGUCUCAGCAUCUCGGCGCUGGAAAAUGUCACAGAUUUUCCAUUGGCAGGUUCCGGGCAGA .((.(...(((((((.((((.......)))))))))))..).))((.((((((..(((((..(......)..)))))..))))))))... ( -30.90) >DroSim_CAF1 28918 90 - 1 UCGUGUUGGCUGGGAGUAGCAAUCGGAGUUGUCUCAGCAUCUCGGCGCUGGAAAAUGUCACAGAUUUUCCAUUGGCAGGUUCCGGGCAGA .((.(...(((((((.((((.......)))))))))))..).))((.((((((..(((((..(......)..)))))..))))))))... ( -30.90) >DroEre_CAF1 31515 89 - 1 UCGUGUUGGCUGAGAGUAGCAAUCGCAGUUGUCUCAGCAUCUCGGUGCUGGAAAAUGUCACAGAUUUUCCAUUGGCAGGUUCCG-GCAGA (((.(...(((((((.((((.......)))))))))))..).)))((((((((..(((((..(......)..)))))..)))))-))).. ( -33.40) >DroYak_CAF1 31986 89 - 1 UCGUGUUGGCUGAGAGUAGCAAUCGGAGUUGUCUCAGCAUCUCGGCGCUGGAAAAUGUCACAGAUUUUCCAUUGGCAGGUUCCG-GCAGA (((.(...(((((((.((((.......)))))))))))..).))).(((((((..(((((..(......)..)))))..)))))-))... ( -32.70) >consensus UCGUGUUGGCUGGGAGUAGCAAUCGGAGUUGUCUCAGCAUCUCGGCGCUGGAAAAUGUCACAGAUUUUCCAUUGGCAGGUUCCGGGCAGA .((.(...(((((((.((((.......)))))))))))..).))((.((((((..(((((..(......)..)))))..))))))))... (-28.92 = -28.92 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:24 2006