Locus 7496

Sequence ID 3R_DroMel_CAF1
Location 20,028,573 – 20,028,669
Length 96
Max. P 0.912824
window12110

overview

Window 0

Location 20,028,573 – 20,028,669
Length 96
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 96.31
Mean single sequence MFE -13.43
Consensus MFE -12.79
Energy contribution -12.79
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.95
SVM decision value 1.09
SVM RNA-class probability 0.912824
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20028573 96 + 27905053
AAAGCC-AAAGACAACA---AACAAAAGUUCGAAAGGCAAAAACCCAAGUGAGCGUAUCGAAAAAGAAAGUGAAAUUCAAAUUGAAAUUUGGUGCGAUUA
...(((-(((.....((---........(((((.(.((....((....))..)).).)))))........))...(((.....))).))))))....... ( -13.59)
>DroSec_CAF1 22232 96 + 1
AAAGCC-AAAGACAACA---AACAAAAGUUCGAAAGGCAAAAACCCAAGUGAGCGUAUCGAAAAAGAAAGUGAAAUUCAAAUUGAAAUUUGGUGCGAUUA
...(((-(((.....((---........(((((.(.((....((....))..)).).)))))........))...(((.....))).))))))....... ( -13.59)
>DroSim_CAF1 22098 96 + 1
AAAGCC-AAAGACAACA---AACAAAAGUUCGAAAGGCAAAAACCCAAGUGAGCGUAUCGAAAAAGAAAGUGAAAUUCAAAUUGAAAUUUGGUGCGAUUA
...(((-(((.....((---........(((((.(.((....((....))..)).).)))))........))...(((.....))).))))))....... ( -13.59)
>DroEre_CAF1 24367 97 + 1
AAAGCCAAAAGACAACA---AACAAAAGUUCGAAAGGCAAAAACCCAAGUGAGCGUAUCGAAAAAGAAAGUGAAAUUCAAAUUGAAAUUUGGUGCGAUUA
...((((((......((---........(((((.(.((....((....))..)).).)))))........))...(((.....))).))))))....... ( -13.59)
>DroPer_CAF1 25355 98 + 1
-AAACG-AAACACAACACAAGACAAAAGUUCGAAAGGCAAAAACCCAAGUGAGCGUAUCGAAAAAGAAAGUGAAAUUCAAAUUGAAAUUUGGUGCGAUUA
-.....-....................(((((...((......))....)))))((((((((........((.....))........))))))))..... ( -12.79)
>consensus
AAAGCC_AAAGACAACA___AACAAAAGUUCGAAAGGCAAAAACCCAAGUGAGCGUAUCGAAAAAGAAAGUGAAAUUCAAAUUGAAAUUUGGUGCGAUUA
...........................(((((...((......))....)))))((((((((........((.....))........))))))))..... (-12.79 = -12.79 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:23 2006