Locus 7495

Sequence ID 3R_DroMel_CAF1
Location 20,025,905 – 20,025,998
Length 93
Max. P 0.718826
window12109

overview

Window 9

Location 20,025,905 – 20,025,998
Length 93
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 92.18
Mean single sequence MFE -32.73
Consensus MFE -27.46
Energy contribution -28.52
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -1.67
Structure conservation index 0.84
SVM decision value 0.39
SVM RNA-class probability 0.718826
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20025905 93 - 27905053
-CCUGACUUGAACUGGUGGUGCCGCUUUUGCGCUGGGGCAACCCAAAGGCGGAAGCAAUUUGAUUGCUUGUGCAUGUCACUUUCACCGCUUGCA
-.......((....(((((((..((((((((..((((....))))...))))))))....(((((((....))).))))....)))))))..)) ( -34.20)
>DroSec_CAF1 19712 93 - 1
-CCUGACUUGAACUGGUAGUGCCGCUUUUGCGCUGGGGCAACCCAAAGGCGGAAGCAAUUUGAUUGCUUGUGCAUGUCACUUUCACCGCUUGCA
-.......((....((..(((..((((((((..((((....))))...))))))))....(((((((....))).))))....)))..))..)) ( -28.90)
>DroEre_CAF1 21775 94 - 1
AAGUCAGGUGGACUGGUGGUGCCGCUAUUGAGCUGGGCCAAAGCAAAGGCGGAAGCAAUUUGAUUGCUUGUGCAUGUCACUUUCACCACUUGCA
..(.(((((((.((..((((.(.(((....))).).)))).)).....(((.(((((((...))))))).)))............)))))))). ( -32.20)
>DroYak_CAF1 21872 94 - 1
ACCUGACUUGGACUGGUGGUGCCGCUUUUGCGCUGGGGCAACCCAAAGGCGGAAGCAAUUUGAUUGCUUGUGCAUGUCACUUUCACCGCUUGCA
.((......))...(((((((..((((((((..((((....))))...))))))))....(((((((....))).))))....))))))).... ( -35.60)
>consensus
_CCUGACUUGAACUGGUGGUGCCGCUUUUGCGCUGGGGCAACCCAAAGGCGGAAGCAAUUUGAUUGCUUGUGCAUGUCACUUUCACCGCUUGCA
..............(((((((..((((((((..((((....))))...))))))))....(((((((....))).))))....))))))).... (-27.46 = -28.52 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:22 2006