| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,008,300 – 20,008,390 |
| Length | 90 |
| Max. P | 0.705116 |
| Location | 20,008,300 – 20,008,390 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 83.25 |
| Mean single sequence MFE | -29.90 |
| Consensus MFE | -16.43 |
| Energy contribution | -17.77 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.17 |
| Mean z-score | -3.17 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.705116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20008300 90 - 27905053 CAGCGCCAGU------UUCAUUGUGAAAUGUCUUUCCAUUCAUUUGUAC-AAUGAGUUUGGAAUCGAAGUCGGAGUCCUCCGGCUUCGGCUCGCAUU ..(((((((.------((((((((((((((..........))))).)))-)))))).))))..(((((((((((....)))))))))))..)))... ( -36.40) >DroSec_CAF1 2281 90 - 1 CAGCGCCAGC------UUCAUUGUGAAAUGUCUCUCCAUUCAUUGGUAC-AAUGAGUUUGGAAUCGAAGUCGGAGUCCUCCGGCUUCGGCUCGCAUU ..(((((((.------(((((((((.((((..........))))..)))-)))))).))))..(((((((((((....)))))))))))..)))... ( -36.10) >DroSim_CAF1 2259 90 - 1 CAGCACCAGC------UUCAUUGUGAAAUGUCUCUCCAUUCAUUGGUAC-AAUGAGUUCGGAAUCGAAGUCGGAGUCCUCCGGCUUUGGCUCGUAUU .(((.(((((------(.(((((((.((((..........))))..)))-)))))))).))...((((((((((....)))))))))))))...... ( -30.90) >DroEre_CAF1 4108 90 - 1 CAGCUCCAGC------UUCAUUGUGAAAUGUCUCUCCAUUCAUUUGUAC-AAUGAGUUUGGAAUCGAAGUCGGAGUCCUCCGGCCUCAGCUCGCAUU .((((((((.------((((((((((((((..........))))).)))-)))))).)))))...((.((((((....)))))).)).)))...... ( -30.20) >DroYak_CAF1 4189 97 - 1 CAGCUUCAGCUUUAACUUCAUUGUGAAAUGUCUCUCCAUUCAUUUGUACGAAUGAGUUUGGCAUCGAAGUCGGAGUCCUCCGGCUUCAGCGCGCAUU ..(((...(((..((((.((((((((((((..........))))).))).)))))))).)))...(((((((((....))))))))))))....... ( -29.40) >DroAna_CAF1 2753 74 - 1 -------AG-------UUCAUUGUGAAAUGUCUCUCCAUUCAUUUGGAC-AAUAAGUCUGUGGUCCGAGUUCGAGUCCUCCGGCU--------CAUA -------.(-------((((..(((((.((......))))))).)))))-....((((.(.((.(((....)).).)).).))))--------.... ( -16.40) >consensus CAGCGCCAGC______UUCAUUGUGAAAUGUCUCUCCAUUCAUUUGUAC_AAUGAGUUUGGAAUCGAAGUCGGAGUCCUCCGGCUUCGGCUCGCAUU .....................(((((........((((((((((......)))))))..)))...(((((((((....)))))))))...))))).. (-16.43 = -17.77 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:16 2006