Locus 7491

Sequence ID 3R_DroMel_CAF1
Location 20,007,211 – 20,007,315
Length 104
Max. P 0.936610
window12102

overview

Window 2

Location 20,007,211 – 20,007,315
Length 104
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 91.80
Mean single sequence MFE -35.10
Consensus MFE -26.30
Energy contribution -26.14
Covariance contribution -0.16
Combinations/Pair 1.08
Mean z-score -2.64
Structure conservation index 0.75
SVM decision value 1.25
SVM RNA-class probability 0.936610
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20007211 104 - 27905053
CGGAGCUGUUAAUUAAGGCGCUAGUUUUAUGUGCGCUUAAAAUAAUUGCUACCGC-------GGUGAUCGGUGAUCGCUGAUCAGCCGCUCAAGUGCUUUAAUCCAGAUAC------
.(((((.((((.((.((((((...........)))))).)).)))).))).))((-------((((((((((....)))))))).))))......................------ ( -35.30)
>DroSec_CAF1 1178 103 - 1
CGGAGCUGUUAAUUA-GGCGCUAGUUUUAUGUGCGCUUAAAAUAAUUGCUACCGC-------GGUGAUUGGUGAUCACUGAUCAGCCGCUCAAGUGCUUUAAUCCAGAUAC------
.(((((.((((.(((-(((((...........))))))))..)))).))).))((-------((((((..((....))..)))).))))......................------ ( -33.40)
>DroSim_CAF1 1162 103 - 1
CGGAGCUGUUAAUUA-GGCGCUAGUUUUAUGUGCGCUUAAAAUAAUUGCUACCGC-------GGUGAUUGGUGAUCACUGAUCAGCCGCUCAAGUGCUUUAAUCCAGAUAC------
.(((((.((((.(((-(((((...........))))))))..)))).))).))((-------((((((..((....))..)))).))))......................------ ( -33.40)
>DroEre_CAF1 2978 103 - 1
CGGAGCUGUUAAUUA-GGCGCUAGUUUUAUGUGCGCUUAAAAUAAUUGCUACCGC-------GCUGAUCGGUGAUCUCUGAUCAGCCGCUCGAGUGCUUAAAUCCAUAUAC------
.(((((.((((.(((-(((((...........))))))))..)))).))).))((-------(((((.((((((((...))))).))).)).)))))..............------ ( -34.40)
>DroYak_CAF1 3076 116 - 1
CGGAGCUGUUAAUUA-GGCGCUAGUUUUAUGUGCGCUUAAAAUAAUUGCUACCGCGGUGAUCGCUGAUCGGUGAUCACUGAUCAGCCGCUCGAGUGCUUUAAUCCAGAUACGAAAUA
((((((.((((.(((-(((((...........))))))))..)))).))).)))((...(((((((((((((....)))))))))).((......)).........))).))..... ( -39.00)
>consensus
CGGAGCUGUUAAUUA_GGCGCUAGUUUUAUGUGCGCUUAAAAUAAUUGCUACCGC_______GGUGAUCGGUGAUCACUGAUCAGCCGCUCAAGUGCUUUAAUCCAGAUAC______
((((((.((((.....(((((...........))))).....)))).))).)))........(.((((((((....)))))))).).((......)).................... (-26.30 = -26.14 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:16 2006