Locus 7490

Sequence ID 3R_DroMel_CAF1
Location 20,005,173 – 20,005,293
Length 120
Max. P 0.858260
window12101

overview

Window 1

Location 20,005,173 – 20,005,293
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 93.16
Mean single sequence MFE -27.77
Consensus MFE -25.95
Energy contribution -25.73
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.00
Structure conservation index 0.93
SVM decision value 0.82
SVM RNA-class probability 0.858260
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20005173 120 + 27905053
CAAGAAACCACAUAAAAGGAACACGCUUUAAUUUACUGCGCCUUGGGACACACAAAUCAGUUGAAAACUUCCUGGAGCCCAGGGUGUAAUUAAGAUUUUAUUUCUCUAAAGCACUUGCCA
((((...((........)).....((((((......(((((((((((.....(((.....)))....(((....))))))))))))))....(((.......))).)))))).))))... ( -28.20)
>DroSec_CAF1 15222 111 + 1
---------ACAUAAAAGGAACACGCUUUAAAUUACUGCGCCUUGGGACACACAAAUCAGUUGGAAACUUCCUGGAGCCCAGGGUGUAAUUAAGAUUUUAUUUCUCUAAAGCACUUGCCA
---------........((.....((((((......(((((((((((.........((((..(....)...))))..)))))))))))....(((.......))).)))))).....)). ( -29.00)
>DroSim_CAF1 15242 111 + 1
---------ACAUAAAAGGAACACGCUUUAAUUUACUGUGCCUUGGGACACACAAAUCAGUUGGAAACUUCCUGGAGCCCAGGGUGUAAUUAAGAUUUUAUUUCUCUAAAGCACUUGCCA
---------........((.....((((((......((..(((((((.........((((..(....)...))))..)))))))..))....(((.......))).)))))).....)). ( -26.10)
>consensus
_________ACAUAAAAGGAACACGCUUUAAUUUACUGCGCCUUGGGACACACAAAUCAGUUGGAAACUUCCUGGAGCCCAGGGUGUAAUUAAGAUUUUAUUUCUCUAAAGCACUUGCCA
.................((.....((((((......(((((((((((.........((((..(....)...))))..)))))))))))....(((.......))).)))))).....)). (-25.95 = -25.73 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:14 2006