Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,639,660 – 2,639,778 |
Length | 118 |
Max. P | 0.795694 |
Location | 2,639,660 – 2,639,778 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.09 |
Mean single sequence MFE | -25.15 |
Consensus MFE | -21.59 |
Energy contribution | -21.31 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.13 |
Mean z-score | -1.42 |
Structure conservation index | 0.86 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795694 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2639660 118 - 27905053 GAGAGGGAGUGCCCGAGAUUAGAUAUGA--AUUUUGAAAAGUUUGCAUAGGAAAUGUGCUUAUAAAUAUGAAAGAGCUAAGGAAAGUGUUAAGCAUUUUCAGAUUCAAAUCUGUUGACUG ....(((....))).....(((((.(((--((((.....((((((((((.....)))))((((....))))..)))))...(((((((.....)))))))))))))).)))))....... ( -25.90) >DroSec_CAF1 39777 118 - 1 GAGAGGGAGUGCCCGAGAUUAGAUAUGA--AUUUUGAAAAGUUUGCAUAGGAAACGUGCUUAUAAAUAUGAAAGAGCUAAGGAAAGUGUCAAGCGUUUUCAGAUUCAAAUCUGUUGACUG ....(((....))).....(((((.(((--((((.(((((((((((((.(....)..((((............))))........))).))))).)))))))))))).)))))....... ( -28.10) >DroSim_CAF1 28044 118 - 1 GAGAGGGAGUGCCCGAGAUUAGAUAUGA--AUUUUGAAAAGUUUGCAUAGGAAAUGUGCUUAUAAAUAUGAAAGAGCUAAGGAAAGUGUCAAGCGUUUUCAGAUUCAAAUCUGUUGACUG ....(((....))).....(((((.(((--((((.(((((((((((((.........((((............))))........))).))))).)))))))))))).)))))....... ( -25.73) >DroEre_CAF1 30661 118 - 1 GAGAGGGAGUGCCCGAGAUUAGAUAUGA--GUUUUGAAAAGUUUGCAUAUGAAAUGUACUCAUAAAUAUGAAAGAGCUAAGGAAAGUGUUAAGCGUUUUCGGAUUCAAAUCUGUUGACUG ....(((....))).....(((((.(((--((((.....(((((.(((((...(((....)))..)))))...)))))...(((((((.....)))))))))))))).)))))....... ( -24.10) >DroYak_CAF1 21437 112 - 1 GAGAGGGAGUGCCCGAGAUUAGAUAUGAAAAUUUUAAAAAGUUUGCAUAGGAAAUGUGCUCAUAAAUUUGAAAGAGCUAUGGAAAGUGUCAAGCGUUUUCGGAUUCAAAUUU-------- ....(((....))).........(((((((((((....))))))(((((.....))))))))))((((((((((.(((.(((......)))))).)))))))))).......-------- ( -21.90) >consensus GAGAGGGAGUGCCCGAGAUUAGAUAUGA__AUUUUGAAAAGUUUGCAUAGGAAAUGUGCUUAUAAAUAUGAAAGAGCUAAGGAAAGUGUCAAGCGUUUUCAGAUUCAAAUCUGUUGACUG ....(((....))).....(((((.(((....((((((((((((((((.........((((............))))........))).))))).)))))))).))).)))))....... (-21.59 = -21.31 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:04 2006