Locus 7489

Sequence ID 3R_DroMel_CAF1
Location 19,999,326 – 19,999,435
Length 109
Max. P 0.914464
window12100

overview

Window 0

Location 19,999,326 – 19,999,435
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 73.40
Mean single sequence MFE -19.20
Consensus MFE -3.36
Energy contribution -4.08
Covariance contribution 0.72
Combinations/Pair 1.38
Mean z-score -1.92
Structure conservation index 0.17
SVM decision value 1.10
SVM RNA-class probability 0.914464
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19999326 109 - 27905053
AAAAAUCAAACGAAAGGGAAAACACAUAAAUUGCGAAAACUUGUG------UGUGAAAUUAAAAGAAAUUUAUAAAAUCAAAUAAUGAUUUA-----GACUAAGAGCUGAUUGCCCAGCA
..((((((..(....).....((((((((.((.....)).)))))------)))...............................)))))).-----........((((......)))). ( -18.30)
>DroSec_CAF1 9402 108 - 1
AAAAA-CAAACGAAGGGGAAAACACAUAAAUUGCGAAAACUUGUG------UGUGAAAUUGAAAGAAAUUUAUAAAAUCAAAUAUUGAUGUA-----GACUAUGAGCUGAUUGCCCAGCA
.....-........(((.((.((((((((.((.....)).)))))------)))..............((((((..((((.....))))...-----...))))))....)).))).... ( -15.10)
>DroSim_CAF1 9436 108 - 1
AAAAA-CAAACGAAGGGGAAAACACAUAAAUUGCGAAAACUUGUG------UGUGAAAUUGAAAGAAAUUUAUAAAAUCAAAUAUUGAUUUA-----GACUAAGAGCUGAUUGCCCAGCA
.....-(((.(....).....((((((((.((.....)).)))))------)))....))).............((((((.....)))))).-----........((((......)))). ( -16.50)
>DroEre_CAF1 9397 106 - 1
AGAAA-CAAACUAAAGGGAAAAUACAUAAAUUACGAAAGCGUGUG------UAUAAAAUGAAAAUACAUUUAUAAUAACAAAUAUAGAUUUA-----GACU--GAGCUGAUUGCUCGGCA
.....-....(((((......(((((((.....(....)..))))------))).(((((......))))).................))))-----).((--((((.....)))))).. ( -18.60)
>DroAna_CAF1 10266 118 - 1
UGGUG-CCGGGUAAGAGUGAAAUUAAAACAUUACGAUCCCCUCUGAUUUAAUGAGAUAUUAAAAGAAAUUUA-AAAAUCAAACAUUCAAAUAAAUUUGGCCAGCGACCGCUGGCUAAACA
.....-........(((((.........(((((.((((......))))))))).(((.((.(((....))).-)).)))...))))).......((((((((((....)))))))))).. ( -27.50)
>consensus
AAAAA_CAAACGAAGGGGAAAACACAUAAAUUGCGAAAACUUGUG______UGUGAAAUUAAAAGAAAUUUAUAAAAUCAAAUAUUGAUUUA_____GACUAAGAGCUGAUUGCCCAGCA
......................((((.....(((((....)))))......))))..................................................((((......)))). ( -3.36 =  -4.08 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:13 2006