Locus 7488

Sequence ID 3R_DroMel_CAF1
Location 19,996,975 – 19,997,086
Length 111
Max. P 0.681071
window12099

overview

Window 9

Location 19,996,975 – 19,997,086
Length 111
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 75.47
Mean single sequence MFE -29.62
Consensus MFE -16.72
Energy contribution -17.66
Covariance contribution 0.94
Combinations/Pair 1.08
Mean z-score -1.87
Structure conservation index 0.56
SVM decision value 0.31
SVM RNA-class probability 0.681071
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19996975 111 + 27905053
AAUGGCCGAUCGUAGAUCAUAGAGUCGACUGCAGGGGAUUAACCUAGAUCGCUACUACGCUAGGUAGUUUCGAUUUAUGCGAGGUAUCUAAAACCGUGUAUGUGCACUAUA
...((..((((...)))).((((.....((((((((......)))((((((..(((((.....)))))..)))))).))).))...))))...))((((....)))).... ( -27.00)
>DroSec_CAF1 7058 95 + 1
AAUGGCCGAUCGUAGAUCAUGGAGUCGACUGCAGGGGAUUACCCUAGAUCG------CGCUAGGUAGUUAU-AGCUAU---AGGUAGCUA------UGUUUUUGCACUAUA
..(((((((((((((.((........))))))((((.....)))).)))))------.)))).((((.(((-(((((.---...))))))------))...))))...... ( -32.90)
>DroSim_CAF1 7089 95 + 1
AAUGGCCGAUCGUAGAUCAUGGAGUCGACUGCAGGGGAUUACCCUAGAUCG------CGCCAGGUAGUUAU-AGCUAU---AGGUAGCUA------UGUUUUUGCACUAUA
..(((((((((((((.((........))))))((((.....)))).)))))------.)))).((((.(((-(((((.---...))))))------))...))))...... ( -35.20)
>DroEre_CAF1 7078 89 + 1
AAUGGCUGAUCGUAGAUCACGGAGUCGACUGCAGGGGAUUACCCUGUAUCA------CGCUUGGUAGUUUCAAGUUAUAAGAGGUAUCUAAAACU----------------
.((((((((((...))))((.((((.((.(((((((.....))))))))).------.)))).)).......)))))).(((....)))......---------------- ( -23.40)
>consensus
AAUGGCCGAUCGUAGAUCAUGGAGUCGACUGCAGGGGAUUACCCUAGAUCG______CGCUAGGUAGUUAC_AGCUAU___AGGUAGCUA______UGUUUUUGCACUAUA
..(((((((((((((.((........))))))((((.....)))).))))).......))))..........((((((.....))))))...................... (-16.72 = -17.66 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:12 2006