| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,995,575 – 19,995,669 |
| Length | 94 |
| Max. P | 0.946386 |
| Location | 19,995,575 – 19,995,669 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 74.48 |
| Mean single sequence MFE | -20.38 |
| Consensus MFE | -8.19 |
| Energy contribution | -7.92 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.40 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19995575 94 - 27905053 AAACAAUAAUUUG------CAUUCAUCAAUUUAGCAAU-UUAGCUGCACUUCCGCAGCGCAUUUGAAAUC--UGCAAAAUUGUGCUACAUUUAUUGUCACAUA-------------- ..(((((((...(------((.....((((((.(((((-((.(((((......))))).......)))).--))).))))))))).....)))))))......-------------- ( -20.40) >DroPse_CAF1 6110 100 - 1 UGACAACAAUUUGCGUAGGCAUUCAUCAGCUCAGUAGUUUUAGCUGCACUUCCGUGACAUAUUUUAUAGCAUAACCAAUUUGUCCCACAUAUAACAGCCA----------------- .(((((....(((.((..((......(((((.((....)).)))))(((....)))............))...))))).)))))................----------------- ( -13.90) >DroSec_CAF1 5687 95 - 1 AAACAAUAAUUUG------CAUUCAUCAAUUUAGCAGUCUUAGCUGCACUUCCGCAGCGUAUUUGAAAUC--UGCAAAAUUGUGCCACAUUUAUUGUCACAAA-------------- ..(((((((...(------((.....((((((.((((((...(((((......)))))......))...)--))).))))))))).....)))))))......-------------- ( -22.20) >DroSim_CAF1 5691 95 - 1 AAACAAUAAUUUG------CAUUCAUCAAUUUAGCAGUCUUAGCUGCACUUCCGCAGCGUAUUUGAAAUC--UGCAAAAUUGUGCCACAUUCAUUGUCACAAA-------------- ..((((((((..(------((.....((((((.((((((...(((((......)))))......))...)--))).)))))))))...))).)))))......-------------- ( -19.80) >DroEre_CAF1 5680 109 - 1 AAACAAUAAUUUG------CAUUCAUCAAUUUUACAGUCUUAGCUGCACUUCCGCAGCGUAUUUGCAGUC--UGCCAAAUUGUGCCACAUUUAUUGUCAAAGAUAACCAUACACAAA ..(((((((...(------((.....((((((..(((.((..(((((......)))))((....)))).)--))..))))))))).....))))))).................... ( -20.80) >DroYak_CAF1 5691 109 - 1 AAACAAUAAUUUG------CAUUCAUCAAUUUUACAGUCUAAGCUGCACUUCCGCAGCGCACUUGUAGUU--GGCAAAAUUGUGCCACAUUUAUUGACAACGAUAAACAUGCACAAA .........((((------(......((((..(((((.....(((((......)))))....))))))))--)))))).((((((....(((((((....)))))))...)))))). ( -25.20) >consensus AAACAAUAAUUUG______CAUUCAUCAAUUUAGCAGUCUUAGCUGCACUUCCGCAGCGUAUUUGAAAUC__UGCAAAAUUGUGCCACAUUUAUUGUCAAAAA______________ .....(((((((..............................(((((......)))))((.............)).))))))).................................. ( -8.19 = -7.92 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:11 2006