Locus 7486

Sequence ID 3R_DroMel_CAF1
Location 19,991,461 – 19,991,557
Length 96
Max. P 0.603509
window12097

overview

Window 7

Location 19,991,461 – 19,991,557
Length 96
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 79.89
Mean single sequence MFE -27.99
Consensus MFE -16.25
Energy contribution -16.58
Covariance contribution 0.34
Combinations/Pair 1.19
Mean z-score -1.76
Structure conservation index 0.58
SVM decision value 0.14
SVM RNA-class probability 0.603509
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19991461 96 - 27905053
AUAUCUAGCACUGAAAUCCGUUGGCUGAUCCAAGUCGAUCUCAAAG-GUCUUACUGCUAUUGG-----GUUUGUGCUCCAUGUACUUCAUGGAGUAGUCAAU
.............(((((((.((((.(((....)))((((.....)-))).....)))).)))-----)))).(((((((((.....)))))))))...... ( -27.40)
>DroPse_CAF1 1582 93 - 1
GUAGCGUGCACUAAAGUCCGUGGGCUGAUCCAAGUCGAUCUCGAAA-GUCUU---GGUGUCCG-----GCUUAUGCUCCAUGUACUUCAUGGAGUAGUCAAU
...(((..(......)..)))((((....((((((((....)))..-..)))---)).))))(-----(((...((((((((.....))))))))))))... ( -31.50)
>DroEre_CAF1 1575 96 - 1
AUAUCUAGCACUGAAAUCUGUUGGCUGAUCCAAGUCGAUCUCAAAG-GUCUUACUGCUAUUGG-----GUUUGUGCUCCAUGUAUUUCAUGGAGUAGUCAAU
.....(((((.(((.(((((((((((......))))))).....))-)).))).)))))....-----.....(((((((((.....)))))))))...... ( -27.20)
>DroWil_CAF1 1558 102 - 1
GUAACGAGCACUGAAAUCUGUCGGCUGAUCCAAGUCGAUUUCAAAGCGUUUUGCAGUGGUUGGAGGUGCCUUAUGCUCUACAUAUUUCAUUGAGUAGUCAAU
.....(((((((..((((.(((((((......)))))))......((.....))...))))...)))))....(((((.............))))).))... ( -22.72)
>DroAna_CAF1 1573 96 - 1
AUAUCUAGCACUAAAAUCAGUGGGUUGGUCUAAAUCUAUCUCGAAC-GGCUUACUGCUAUUAG-----GUUUAUGCUCCAUGUACUUCAUGGAGUAGUCGAU
..(((.(((.((((...((((((((((.((............)).)-)))))))))...))))-----)))..(((((((((.....)))))))))...))) ( -27.60)
>DroPer_CAF1 1582 93 - 1
GUAGCGUGCACUAAAGUCCGUGGGCUGAUCCAAGUCGAUCUCGAAA-GUCUU---GGUGUCCG-----GCUUAUGCUCCAUGUACUUCAUGGAGUAGUCAAU
...(((..(......)..)))((((....((((((((....)))..-..)))---)).))))(-----(((...((((((((.....))))))))))))... ( -31.50)
>consensus
AUAUCGAGCACUAAAAUCCGUGGGCUGAUCCAAGUCGAUCUCAAAG_GUCUUACUGCUAUUGG_____GCUUAUGCUCCAUGUACUUCAUGGAGUAGUCAAU
...................(((((((......)))))))..................................(((((((((.....)))))))))...... (-16.25 = -16.58 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:10 2006