Locus 7485

Sequence ID 3R_DroMel_CAF1
Location 19,987,177 – 19,987,267
Length 90
Max. P 0.807936
window12096

overview

Window 6

Location 19,987,177 – 19,987,267
Length 90
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 79.49
Mean single sequence MFE -25.75
Consensus MFE -17.74
Energy contribution -20.43
Covariance contribution 2.70
Combinations/Pair 1.27
Mean z-score -1.62
Structure conservation index 0.69
SVM decision value 0.64
SVM RNA-class probability 0.807936
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19987177 90 - 27905053
UG-UAGGGUAUGCGAAUCGAUUGGUGGCUCAGAGACUAUAUCGAUAUGGUCGUCGAUGGCUGGGCCACCACUAGUACCCACUGGAUGCAAA
..-..((((((.((...))..(((((((((((......(((((((......))))))).)))))))))))...))))))............ ( -34.10)
>DroSec_CAF1 5471 90 - 1
UG-UAGGGUAUGCAAAUCGAUUGGUGGCUCUGAGACAAUAUCGAUAUGGUCGUCGAUGGCUGGGCCACCACUAGUACUCACUGGAUGCAAA
..-.......((((.......(((((((((..((....(((((((......))))))).)))))))))))(((((....))))).)))).. ( -30.70)
>DroSim_CAF1 5410 90 - 1
UG-UAGGGUAUGCAAAUCGAUUGGUGGCUUAGAGACUAUAUCGAUAUGGUCGUCGAUGGCUGUGCCACCACUAGUACUCACUGGAUGCAAA
..-.......((((.......(((((((.(((......(((((((......))))))).))).)))))))(((((....))))).)))).. ( -28.90)
>DroEre_CAF1 5467 91 - 1
UGCUAGGGUAUGCAAAUCGAUUCAUGGCCAAGAGACAACAUCGAUAGUGUCAUCGAUGGCUGGGCCACCACUAGUACUCACUGGAUGCAAA
..........((((..........(((((...((....(((((((......))))))).)).)))))...(((((....))))).)))).. ( -25.40)
>DroYak_CAF1 5413 82 - 1
UGCUAGGGUAUGCAAAUCGAUUGGUGGCAA---------AUCGAUAGUGUCAUCAACGGUUGUGCCAUCACUAGUACCCACUGGAUGCAAA
(((...(((((...(((((.(((((((((.---------........)))))))))))))))))))....(((((....)))))..))).. ( -24.40)
>DroAna_CAF1 5462 76 - 1
UGUCAAGGAAUGCAAAUCGAUACCUGGCUAAGAAAAU------------UCAUCGAUGAUUG-ACCAUCACUAGUAC-CACUGGAUGCAA-
..........((((.......................------------.....((((....-..)))).((((...-..)))).)))).- ( -11.00)
>consensus
UG_UAGGGUAUGCAAAUCGAUUGGUGGCUAAGAGACUAUAUCGAUAUGGUCAUCGAUGGCUGGGCCACCACUAGUACUCACUGGAUGCAAA
..........((((.......((((((((.((......(((((((......))))))).)).))))))))(((((....))))).)))).. (-17.74 = -20.43 +   2.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:09 2006