| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,986,612 – 19,986,712 |
| Length | 100 |
| Max. P | 0.842678 |
| Location | 19,986,612 – 19,986,712 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 79.52 |
| Mean single sequence MFE | -21.00 |
| Consensus MFE | -13.11 |
| Energy contribution | -13.00 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842678 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19986612 100 - 27905053 AGAACCUGUCCGAGGAUAGUUUCAUAAACAACAUCCACCAGCGCUAUAAGCGCGAUCACAUAUAUGUGAGUCCGUACAGUUCUAC--ACUCUUCA----GAUUUCU (((((.(((.((.((((.(((........)))))))....((((.....))))(((((((....))))).)))).))))))))..--........----....... ( -24.20) >DroPse_CAF1 11618 92 - 1 AGAAUCUGUCCGAGGAUAAUUUUAUAAAUAACAUCCACCAGCGCUAUAAGCGCGAUCAUAUAUAUGUAAG--CAUACAUGUGUACAU------------GAUUUGU .(((..((((....))))..))).................((((.....))))(((((((((((((((..--..))))))))))..)------------))))... ( -21.00) >DroGri_CAF1 4935 102 - 1 AAAACCUGUCCGAGGAUAGCUUCAUAAAUAACAUACACCAGCGUUACAAACGCGAUCACAUAUAUGUAACUAUAUAAA-UUAUAC--ACUCAGCGAAUAUAUUUU- .....(((((....))))).(((.................((((.....)))).......((((((....))))))..-......--.......)))........- ( -11.50) >DroEre_CAF1 4897 102 - 1 AGAACCUGUCCGAGGAUAGUUUCAUAAACAACAUCCACCAGCGCUAUAAGCGCGAUCACAUAUAUGUGAGUCCUUAAAGUUCUACAAACUCUUCA----CAUGUCU .(((.(((((....))))).))).................((((.....))))........(((((((((.......((((.....)))).))))----))))).. ( -21.30) >DroYak_CAF1 4843 102 - 1 AGAACCUGUCCGAGGAUAGUUUCAUAAACAACAUCCACCAGCGCUAUAAGCGCGAUCACAUAUAUGUGAGUGCUUAGAGACCUACCAACUCUUCA----CAUUUCU .(((.(((((....))))).))).................((((.....))))..(((((....)))))(((...((((.........)))).))----)...... ( -24.40) >DroPer_CAF1 10244 92 - 1 AGAAUCUGUCCGAGGAUAGUUUUAUAAACAACAUCCACCAGCGCUAUAAGCGCGAUCAUAUAUAUGUAAG--CAUACAUGUGUACAU------------GAUUUGU .(((.(((((....))))).))).................((((.....))))(((((((((((((((..--..))))))))))..)------------))))... ( -23.60) >consensus AGAACCUGUCCGAGGAUAGUUUCAUAAACAACAUCCACCAGCGCUAUAAGCGCGAUCACAUAUAUGUAAGU_CAUACAGUUCUACA_ACUCUUCA____GAUUUCU .(((.(((((....))))).))).................((((.....))))..................................................... (-13.11 = -13.00 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:08 2006