Locus 7483

Sequence ID 3R_DroMel_CAF1
Location 19,985,777 – 19,985,867
Length 90
Max. P 0.969935
window12094

overview

Window 4

Location 19,985,777 – 19,985,867
Length 90
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 72.19
Mean single sequence MFE -37.70
Consensus MFE -17.82
Energy contribution -16.63
Covariance contribution -1.19
Combinations/Pair 1.58
Mean z-score -2.21
Structure conservation index 0.47
SVM decision value 1.65
SVM RNA-class probability 0.969935
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19985777 90 - 27905053
------GCAGCAG---CCAAGGGAUCGCCCAAAUACGCGGUACCCACCGUGUACGGCGGUUGCCGCCAGUGCGGACACAGCAAGUGUGUCCGUGCUCAG
------(((((.(---((..(((....)))...((((((((....)))))))).))).)))))....((..((((((((.....))))))))..))... ( -45.80)
>DroPse_CAF1 10752 96 - 1
CAAAAGGGGGCAACCAGCAACACAUCGCCCAAGUAUGCCAUGCUCUC---GUAUGGCGGCUGUCGCCAGUGCGGCCACAGCAAAUGCAUACGCGCCCAG
.....(((.((.....((........))....(((((((((((....---))))))).(((((.(((.....))).)))))..))))....)).))).. ( -37.60)
>DroSec_CAF1 4005 90 - 1
------GCGGCAG---CCAAGGGAUCGCCCAAAUACGCGGUACCCACCGUGUACGGCGGUUGCCGCCAGUGCGGACACAGCAAGUGCGUUCGUGCUCAG
------(((((((---((..(((....)))...((((((((....))))))))....))))))))).((..(((((.((.....)).)))))..))... ( -45.10)
>DroEre_CAF1 4058 90 - 1
------GCGGCCG---CCAAGGGAUCGCCGAAAUAUGCCGUACCCACCAUGUACGGCGGUUGCCGUCAGUGCGGCCACAGCAAGUGCGUCCGUGCUCAG
------(((((.(---((..((.....)).......(((((((.......)))))))))).))))).((..(((((((.....))).).)))..))... ( -37.60)
>DroAna_CAF1 3934 77 - 1
----------CCG---CAAAGGGAUCACCCAAAUAUGCUG---------CCUACGGAGGCUGUCGCCAGUGUGGUCAUAGCAAAUGCGUCCGUGCCCAG
----------.((---((..(((....))).....(((((---------.(((((..(((....)))..)))))...)))))..))))........... ( -22.50)
>DroPer_CAF1 9378 96 - 1
CAAAAGGGGGCAACCAGCAACACAUCGCCCAAGUAUGCCAUGCUCUC---GUAUGGCGGCUGUCGCCAGUGCGGCCACAGCAAAUGCAUACGCGCCCAG
.....(((.((.....((........))....(((((((((((....---))))))).(((((.(((.....))).)))))..))))....)).))).. ( -37.60)
>consensus
______GCGGCAG___CCAAGGGAUCGCCCAAAUAUGCCGUACCCAC__UGUACGGCGGCUGCCGCCAGUGCGGCCACAGCAAAUGCGUCCGUGCCCAG
.........................(((.......((((((((.......))))))))((((((((....))))...))))..........)))..... (-17.82 = -16.63 +  -1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:07 2006