| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,983,288 – 19,983,408 |
| Length | 120 |
| Max. P | 0.730060 |
| Location | 19,983,288 – 19,983,408 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.39 |
| Mean single sequence MFE | -42.27 |
| Consensus MFE | -24.45 |
| Energy contribution | -25.07 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730060 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19983288 120 - 27905053 AUAAGUUGCUCAACAGCCUGACGUGGCCCCACUUUCAUGGCGGCAGUCAGGUAGAGGGUAUCGCCCUCAUAAUCCGUAACCUACCGCUGCCCUCAGCGGAGUUCACGAUCGGCACCAAAA ....(.((((.....(((((((...((((((......))).))).))))))).(((((.....)))))......(((...((.((((((....))))))))...)))...)))).).... ( -46.00) >DroVir_CAF1 1654 120 - 1 ACAAGCUGCUCAACAGUUUGACCUGGCCGCAUUUCCAUGGCGGCAGCCAGGUGGAGGGCAUAGCUCUGAUCAUACGCAAUCUGCCGCUGCCGUCGGCUGAGUUUACGCUCGGCACCAAGA .(((((((.....))))))).(.(((...........((((((((((..((..((..((.((..........)).))..))..))))))))))))(((((((....))))))).))).). ( -48.10) >DroGri_CAF1 1553 120 - 1 ACAAGCUGCUCAAUAGCCUUACUUGGCCCCAUUAUCACGGUGGCAGUCAAGUGGAGGGCAUUGCUCUGAUCAUACGAAAUUUGCCGCUGCCAUCGGCUGAGUUUACGCUGGGCACCAAAA ....(.((((((...((...(((..(((..........((((((((((((((..(((((...)))))..((....)).)))))..))))))))))))..)))....)))))))).).... ( -37.50) >DroWil_CAF1 7752 120 - 1 ACAAGUUGCUCAACAGUCUCACCUGGCCGCAUUUCCAUGGCGGCAGUCAGGUGGAGGGAAUCGCGCUUAUUAUACGCAAUCUGCCUUUACCCUCAGCCGAGUUUACCAUUGGCACCAAAA ....(((....))).....(((((((((((.........)))))...))))))(((((.(..(.((..(((......)))..)))..).))))).(((((........)))))....... ( -34.50) >DroMoj_CAF1 1631 120 - 1 AUAAGCUGCUCAAUAGUUUGACUUGGCCGCACUAUCACGGUGGCAGCCAAGUAGAGGGCAUUGCUCUGAUCAUAAGAAAUUUGCCGUUGCCCUCGGCCGAGUUUACUCUCGGCACCAAAA .(((((((.....)))))))(((((((.(((((.....))).)).))))))).(((((((..((.....((....)).....))...))))))).((((((......))))))....... ( -44.90) >DroAna_CAF1 1531 120 - 1 ACAAGCUGCUCAACAGUUUGACCUGGCCUCACUUCCACGGCGGCAGUCAGGUGGAGGGCAUCGCAUUGAUCAUCCGCAAUCUUCCACUGCCCUCCGCCGAGUUCACCAUCGGCACCAAAA .(((((((.....)))))))(((((((.((.((.....)).))..)))))))((((((((.......(((........)))......))))))))(((((........)))))....... ( -42.62) >consensus ACAAGCUGCUCAACAGUCUGACCUGGCCGCACUUCCACGGCGGCAGUCAGGUGGAGGGCAUCGCUCUGAUCAUACGCAAUCUGCCGCUGCCCUCGGCCGAGUUUACGAUCGGCACCAAAA ....((((((...(((......)))(((..........)))))))))..(((.(((((((..((...(((........))).))...))))))).(((((........)))))))).... (-24.45 = -25.07 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:06 2006