Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,638,397 – 2,638,516 |
Length | 119 |
Max. P | 0.646755 |
Location | 2,638,397 – 2,638,516 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 96.97 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -26.64 |
Energy contribution | -26.16 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.10 |
Mean z-score | -1.13 |
Structure conservation index | 0.97 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.646755 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2638397 119 - 27905053 GAAUUUCUUUCUUAGUUCUCUUUUAGCAUUUCUACCUGCCUCUCGAUAUUCGCGGCGAAUGGCAGGAAGGUGAAGCAGAAAUAAUAAUAUUAUUCAGUAAACUGAAACAACCUUGGCCU (((((........)))))................((((((..(((..........)))..)))))).((((.(((....((((....)))).(((((....))))).....))).)))) ( -26.20) >DroSec_CAF1 38547 119 - 1 GAAUUUCUUUCUUAGUUCUCUUUUAGCAUUUCUACCUGCCUCUCGAUAUUCGCGGCGAAUGGCAGGAAGGUGAAGCAGCGAUAAUAAUAUUAUUCAGUAAACUGAAACAACCUUGGCCU (((((........)))))................((((((..(((..........)))..)))))).((((.(((....((((....)))).(((((....))))).....))).)))) ( -26.60) >DroSim_CAF1 26776 119 - 1 GAAUUUCUUUCUUAGUUCUCUUUUAGCAUUUCUACCUGCCUCUCGAUAUUCGCGGCGAAUGGCAGGAAGGUGAAGCAGCAAUAAUAAUAUUAUUCAGUAAACUGAAACAACCUUGGCCU (((((........)))))................((((((..(((..........)))..)))))).((((.(((....((((....)))).(((((....))))).....))).)))) ( -26.20) >DroEre_CAF1 29406 119 - 1 GAAUUUCUUUCUUAGUUCUCUUUUAGCAUUUCUACCUGCCUCUCGAUUUUCGCGGCGAAUGGCAGGAAGGUGAAGUAGCAAUAAUAAUAUUAUUCAGUAAACUGAAACAACCUUGGCCU (((((........)))))................((((((..(((..........)))..)))))).((((.(((((....)).........(((((....))))).....))).)))) ( -26.70) >DroYak_CAF1 20320 119 - 1 GAAUUUCUUUCUUAGUUCUCUUUUAGCAUUUCUACCUGCCUCUCGCUUUUCGCGGCGAAUGGCAGGAGGGUAAAGUAGCAGUAAUAAUAUUAUUCAGUAAACUGAAACAACCUUGGCCU (((((........))))).......((.......((((((..(((((......)))))..))))))(((((..((((..(....)..)))).(((((....)))))...))))).)).. ( -31.40) >consensus GAAUUUCUUUCUUAGUUCUCUUUUAGCAUUUCUACCUGCCUCUCGAUAUUCGCGGCGAAUGGCAGGAAGGUGAAGCAGCAAUAAUAAUAUUAUUCAGUAAACUGAAACAACCUUGGCCU (((((........)))))................((((((..(((..........)))..)))))).((((.(((....((((....)))).(((((....))))).....))).)))) (-26.64 = -26.16 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:03 2006