| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,981,420 – 19,981,510 |
| Length | 90 |
| Max. P | 0.982926 |
| Location | 19,981,420 – 19,981,510 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 90.01 |
| Mean single sequence MFE | -22.12 |
| Consensus MFE | -20.59 |
| Energy contribution | -20.57 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.982926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19981420 90 - 27905053 ---------ACAAUUUAGUUUCGU---UCACAAGUGACAAUCAGAGUAACCAAUUUGUUGUCAGGAUUGUGCCAAAAGCAGAAAACUAGAAUUGUACCAAUG- ---------(((((((((((((((---((((((.((((((.((((........))))))))))...))))).....))).).))))).))))))).......- ( -19.70) >DroSec_CAF1 40974 89 - 1 ----------CAAUUUAGUUUCGU---UCACAAGUGACAAUCAGAGUAACCAAUUUGUUGUCAGGAUUGUGCCAAAAGCAGGAAACUAGAAUUGUACCAAUG- ----------((((((((((((..---..((((.((((((.((((........))))))))))...))))((.....))..)))))).))))))........- ( -20.50) >DroSim_CAF1 43093 89 - 1 ----------CAAUUUAGUUUCGU---UCACAAGUGACAAUCAGAGUAACCAAUUUGUUGUCAGGAUUGUGCCAAAAGCAGGAAACUAGAAUUGUGCCAAUG- ----------((((((((((((..---..((((.((((((.((((........))))))))))...))))((.....))..)))))).))))))........- ( -20.50) >DroEre_CAF1 42651 91 - 1 ---------AUAAUUUAGUUUCGU---UCACAAGUGACAAUCAGAGUAACCAAUUUGUUGUCAGGAUUGUGCCAAAAGCAGGAAACUAGAAUUGUACCAAGGA ---------(((((((((((((..---..((((.((((((.((((........))))))))))...))))((.....))..)))))).)))))))........ ( -20.40) >DroYak_CAF1 41239 91 - 1 ---------ACAAUUUAGUUUCGU---UCACAAGUGACAAUCAGAGUAACCAAUUUGUUGUCAAGAUUGUGCCAAAAGCAGGAAACUAGAAUUGUGCCAAGGA ---------(((((((((((((..---..((((.((((((.((((........))))))))))...))))((.....))..)))))).)))))))........ ( -23.40) >DroAna_CAF1 43496 103 - 1 AGAUGGAAGACGAUUUAGUUUUGUGACACACAAGUGACAAUCAGAGUAACCGAUUUGUUGUCAGGAUUGUGCCAAAUGCAGGAGACUAGAAUUGUGCCAAGGC ...(((...(((((((((((((.((.(((((((.((((((.((((........))))))))))...))))).....)))).)))))).))))))).))).... ( -28.20) >consensus _________ACAAUUUAGUUUCGU___UCACAAGUGACAAUCAGAGUAACCAAUUUGUUGUCAGGAUUGUGCCAAAAGCAGGAAACUAGAAUUGUACCAAGG_ .........(((((((((((((((....(((((.((((((.((((........))))))))))...)))))......))..)))))).)))))))........ (-20.59 = -20.57 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:03 2006