| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,979,531 – 19,979,623 |
| Length | 92 |
| Max. P | 0.520840 |
| Location | 19,979,531 – 19,979,623 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 77.48 |
| Mean single sequence MFE | -19.55 |
| Consensus MFE | -11.11 |
| Energy contribution | -10.42 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.57 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520840 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19979531 92 + 27905053 UUUU---UC------------UUUAAUAGCCAACCCACUGUCAUUCCAAUGGAGGAGGUCACUCUACUCACUGUCAUUCCCUGGUUCCACGCCUUCGGCUGUCUGAC ....---..------------....((((((...(((.((......)).))).((((((......((.((..(.....)..)))).....))))))))))))..... ( -18.00) >DroSec_CAF1 39079 92 + 1 CCUU---UC------------UUUAAUAGCCAACCCACUCUCAUUCCAAUGGAGGAGAUCACUCUACUCACUGUCAUUCCUUGGUUCCACGCCUUCGGCUGUCUCAC ....---..------------....((((((.......((((.((((...))))))))........................(((.....)))...))))))..... ( -16.00) >DroEre_CAF1 40771 91 + 1 UUUU----U------------UUUAAUAGCCAGCCCACCCUCAUUCCCAUGUCGGAGAUCACUCUGCUCACUGUCAUUCCCUGGUUCCACGCCUUCGGCUGCCUGAC ....----.------------.....(((.(((((..............((.(((((....)))))..))............(((.....)))...))))).))).. ( -16.80) >DroYak_CAF1 39344 92 + 1 UUUU---CC------------UUUAAUAGCCAGCCCACUCUCAUUCCCAUGGAGGAGAUCACUCUGCUCACUGUCAUUCCCUGGUUCCACGCCUUUGGCUGCCUGAC ....---..------------.....(((.(((((................(((.(((....))).))).............(((.....)))...))))).))).. ( -18.30) >DroMoj_CAF1 42252 99 + 1 UUUUAUCGC-CUU-------UGUUUACAGUCAGCCAACUAUGAUACCAUUCAACGAGAUCACUCUGCUUACUGUCAUUCCGUGGUUCCAUGCUUUUGGCUGCCUGAC .........-...-------......(((.(((((((.((((..(((((.....(((....))).((.....))......)))))..))))...))))))).))).. ( -22.90) >DroAna_CAF1 41522 106 + 1 UUUUAU-UCUCUUAACUGGGCGUAAACAGCCAACCCACCAUGAUUCCCAUGGAAGAAGUUACUCUGCUGACAGUGAUUCCCUGGUUCCAUGCCUUUGGCUGCCUUAC .(((((-.(((......))).)))))(((((((....(((((.....))))).((.(((((((........)))))))..))(((.....))).)))))))...... ( -25.30) >consensus UUUU___UC____________UUUAAUAGCCAACCCACUCUCAUUCCAAUGGAGGAGAUCACUCUGCUCACUGUCAUUCCCUGGUUCCACGCCUUCGGCUGCCUGAC ..........................(((((.....................(((..((.((..........)).))..)))(((.....)))...)))))...... (-11.11 = -10.42 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:02 2006