Locus 7477

Sequence ID 3R_DroMel_CAF1
Location 19,965,450 – 19,965,542
Length 92
Max. P 0.964881
window12087

overview

Window 7

Location 19,965,450 – 19,965,542
Length 92
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 69.91
Mean single sequence MFE -19.85
Consensus MFE -13.78
Energy contribution -13.87
Covariance contribution 0.08
Combinations/Pair 1.25
Mean z-score -1.54
Structure conservation index 0.69
SVM decision value 1.57
SVM RNA-class probability 0.964881
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19965450 92 + 27905053
AUCUUCUGGUUU-UAUGUGCC-------UUUU-AAAUCUGUUU---CCAUUGCCUCUUUUAGGUUCUUUGUACCAGGUCAGCUACCUGGACAUCGAGAGCUGUA
.......(((..-.....)))-------....-..........---...............((((((((((.((((((.....)))))))))..)))))))... ( -19.90)
>DroSec_CAF1 24922 92 + 1
AUCUUCUGGUUU-UAAGUACA-------UUUU-AAAUAUGUUU---CCUUUGCCACUUUCAGGUUCUUUGUACCAGGUCAGCUACCUGGACAUCGAGAGCUGUA
......((((..-.(((.(((-------(...-....))))..---.))).))))......((((((((((.((((((.....)))))))))..)))))))... ( -23.90)
>DroSim_CAF1 26453 96 + 1
AUUUUGUGGUUU-UAAGUACAUA---CCUUUU-AAAUCUGUUU---CCUUUGCCGCUUUCAGGUUCUUUGUACCAGGUCAGCUACCUGGACAUCGAGAGCUGUA
.....(((((..-.(((.(((..---......-.....)))..---.))).))))).....((((((((((.((((((.....)))))))))..)))))))... ( -24.32)
>DroYak_CAF1 24789 98 + 1
AACUUCUAUUUU--ACUGAUAUACUAUCUAUU-AAAUCGGUUU---CCUUGGCUCCUUUCAGGUUCUCUGUACCAGGUCAGCUACCUGGACAUCGAGAGCUGCA
.....(((....--((((((.((........)-).))))))..---...))).........((((((((((.((((((.....)))))))))..)))))))... ( -23.70)
>DroMoj_CAF1 29288 92 + 1
AUAUUAU-AUUC-UAUUUACC-------UAUUUAUU--UAUUUAAUCUAAUGG-UAUUUCAGGCUCUCUGUAUAAUGUGAACUACCUGAACAUUGAAAGCUGCU
.......-.(((-....((((-------........--.............))-)).((((((.((.(........).))....))))))....)))....... (  -8.40)
>DroAna_CAF1 26491 85 + 1
AUUUUUUGAUUCGUGACUAAU---GAUCUAUU-U-AUCUGUU--------------UUUCAGGUUCUCUGUACCAGGUCAACUACCUGCAGAUAGAGAGUUGUA
............(..((....---........-.-(((((..--------------...)))))(((((((..(((((.....)))))...)))))))))..). ( -18.90)
>consensus
AUCUUCUGGUUU_UAAGUACA_______UAUU_AAAUCUGUUU___CCUUUGCCUCUUUCAGGUUCUCUGUACCAGGUCAGCUACCUGGACAUCGAGAGCUGUA
.............................................................((((((((((.((((((.....)))))))))..)))))))... (-13.78 = -13.87 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:01 2006