Locus 7476

Sequence ID 3R_DroMel_CAF1
Location 19,964,104 – 19,964,219
Length 115
Max. P 0.984673
window12086

overview

Window 6

Location 19,964,104 – 19,964,219
Length 115
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 79.23
Mean single sequence MFE -28.90
Consensus MFE -17.93
Energy contribution -17.83
Covariance contribution -0.10
Combinations/Pair 1.25
Mean z-score -2.76
Structure conservation index 0.62
SVM decision value 1.98
SVM RNA-class probability 0.984673
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19964104 115 - 27905053
CCCGAAAAUGGGUGUUGCGGAAGUAAUUCCUUAUUAUUGUAUUAUUAUAGUAUUAUUCGGUAGGUCGAUUUUCCACCGGAAGAUAAUAUUUUAGUAGAAUGAUUUCUAAUUCUAA
...((((..(((.(((((....))))).)))..(((((.(((((..(((.((((.((((((.((........)))))))).)))).)))..))))).)))))))))......... ( -31.00)
>DroSec_CAF1 23755 107 - 1
CCCAAAGAUGGGUGUCUCGGAAGUAAUUUCUAUUUAGUAUACUUCGAU-------UUCGGUAGGUCGAUUUU-UACCGAAAAACUACAUUUUUGGUGAAUGACUUUUAAUUCUAG
.((((((((((((......(((((((((.......))).))))))..(-------(((((((((......))-)))))))).))).))))))))).((((........))))... ( -27.90)
>DroSim_CAF1 25089 107 - 1
CCCAAAGAUGGUUGUUGCGGAAGUAAUUCCUAUUUAGUAUACUUCGAU-------UUCGGUAGGUCGAUUUU-UACCGAAAAACUACAUUUUUGGUGAAUGACUUUUAAUUUUAG
.((((((((((..(((((....)))))..).................(-------(((((((((......))-)))))))).....))))))))).................... ( -27.80)
>consensus
CCCAAAGAUGGGUGUUGCGGAAGUAAUUCCUAUUUAGUAUACUUCGAU_______UUCGGUAGGUCGAUUUU_UACCGAAAAACUACAUUUUUGGUGAAUGACUUUUAAUUCUAG
.(((((((((...(((..((((....)))).........................(((((((.(.......).))))))).)))..))))))))).((((........))))... (-17.93 = -17.83 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:00 2006