Locus 7475

Sequence ID 3R_DroMel_CAF1
Location 19,955,913 – 19,956,003
Length 90
Max. P 0.983480
window12085

overview

Window 5

Location 19,955,913 – 19,956,003
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 95.22
Mean single sequence MFE -25.46
Consensus MFE -24.62
Energy contribution -24.34
Covariance contribution -0.28
Combinations/Pair 1.08
Mean z-score -1.52
Structure conservation index 0.97
SVM decision value 1.94
SVM RNA-class probability 0.983480
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19955913 90 + 27905053
AUCGAUUAUAACAUUCGCACCGGAAUUGGCAAAAAGUUGCGCCAAAACAGCUGAUGUUGUUUUGAUUGCGGCCAAAGCUGCCGGACAUUC
...................((((....(((.....((((((.(((((((((....)))))))))..))))))....))).))))...... ( -25.10)
>DroSec_CAF1 15595 90 + 1
AUCGAUUAUAAAAUUCGCACCGGAAUCGGUGAAAAGUUGCGCCAAAACAGCUGAUGUUGUUUUGAUUGCGGCCAAAGCUGCCGGACAUUC
...................((((...((((.....((((((.(((((((((....)))))))))..))))))....))))))))...... ( -25.70)
>DroSim_CAF1 15330 90 + 1
AUCGAUUAUAAAAUUCGCACCGGAAUCGGUGAAAAGUUGCGCCAAAACAGCUGAUGUUGUUUUGAUUGCGGCCAAAGCUGCCGGACAUUC
...................((((...((((.....((((((.(((((((((....)))))))))..))))))....))))))))...... ( -25.70)
>DroEre_CAF1 16894 90 + 1
UUCGAUUAUAACAUUCGCACCGGAAUUGGCGAAAAGUUGCGCCAAAACAGCUGAUGUUGUUUUGAUUGCGGCCAAAGCUGCCGGACAUUC
...................((((..((((((........))))))..(((((...(((((.......)))))...)))))))))...... ( -26.50)
>DroYak_CAF1 15510 90 + 1
CACGAUUAUAACAUUCGCUACGGAAUCGGCAAAAAGUUGCGCCAAAACAGCUGAUGUUGUUUUGAUUGCGGCCAAAGCUGCCGGACAUUC
..(((.........)))........((((((....((((((.(((((((((....)))))))))..))))))......))))))...... ( -24.30)
>consensus
AUCGAUUAUAACAUUCGCACCGGAAUCGGCGAAAAGUUGCGCCAAAACAGCUGAUGUUGUUUUGAUUGCGGCCAAAGCUGCCGGACAUUC
..(((.........)))..((((...((((.....((((((.(((((((((....)))))))))..))))))....))))))))...... (-24.62 = -24.34 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:59 2006