| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,954,060 – 19,954,169 |
| Length | 109 |
| Max. P | 0.705575 |
| Location | 19,954,060 – 19,954,169 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 75.63 |
| Mean single sequence MFE | -41.68 |
| Consensus MFE | -15.69 |
| Energy contribution | -15.25 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.705575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19954060 109 + 27905053 UACUGUUCGACUGCCUUGGCCUGGUUGGCGAUAGCCAGCUGGCACAGGUUCUCGAUCUCGUCCGGACUGCAGAUUUGCUGCAGGCUGUGCAGUUCGAUUAGCUGUGAUG ......((((..((((..(((.(((((((....))))))))))..))))..))))...(((((((.((((((.....)))))).))).((((((.....)))))))))) ( -44.30) >DroPse_CAF1 16937 107 + 1 UAUUGCAGCACGGCCUUGGGCUGGUUGGAAAUGGCCUGCUGGCAUAAGGCUUCGAUGGAUUCCAGAUCGCAUAUCUGCUCCAGACUGUGCUGCUUAAUGAGCUGGC--G ....((((((((((((((.((..((.((......)).))..)).)))))))....((((...(((((.....))))).))))....))))))).............--. ( -40.50) >DroGri_CAF1 16862 109 + 1 UAUUGCUGCACAGCCUUUGGUUGGUUUACCAUUGCCUGCUGGCAAUAGGCCUCAAUGGUGCUCAUAUCGCAAAUCUGUUCCAGAUUGUGCUCGCCAAUCAGCUGUAAGG .....((..(((((...((((((((.((((((((......(((.....))).))))))))........(((((((((...)))))).)))..))))))))))))).)). ( -35.10) >DroSec_CAF1 13744 109 + 1 UACUGUUGGACUGCCUUGGCCUGGUUGGCGAUAGCCAGCUGGCACAGCUUCUCGAUAGCGUCCAGACUGCAGAUCUGCUGCAGGUUGUGCAGUUCAAUAAGCUGUAAUG ...(((((((((((....(((.(((((((....))))))))))(((((.(((.(((...))).)))((((((.....)))))))))))))))))))))).......... ( -46.20) >DroSim_CAF1 13478 109 + 1 UACUGUUGGACUGCCUUGGCCUGGUUGGCGAUAGCCAGCUGGCACAGGUUCUCGAUCUCGUCCAGACUGCAGAUCUGCUGCAGGUUGUGCAGUUCAAUAAGCUGUGAUG ...((((((((((((((((((.(((((((....)))))))))).)))).(((.(((...))).)))((((((.....)))))).....))))))))))).......... ( -44.80) >DroPer_CAF1 17411 107 + 1 UACUGCAGCACGGCCUUGGGCUGGUUGGAAAUGGCCUGCUGGCAUAAGGCUUCGAUGGUUUCCAGAUCGCAUAUCUGCUCCAGACUGUGCUGCUUAAUGAGCUGGC--G ....((((((((((((((.((..((.((......)).))..)).)))))))....(((....(((((.....)))))..)))....))))))).............--. ( -39.20) >consensus UACUGCUGCACUGCCUUGGCCUGGUUGGCGAUAGCCAGCUGGCACAAGGCCUCGAUGGCGUCCAGACCGCAGAUCUGCUCCAGACUGUGCAGUUCAAUAAGCUGUAAUG ..........((((((((..(..((.(((....))).))..)..))))....................((((.((((...))))))))))))................. (-15.69 = -15.25 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:58 2006