Locus 7471

Sequence ID 3R_DroMel_CAF1
Location 19,952,410 – 19,952,518
Length 108
Max. P 0.888427
window12079

overview

Window 9

Location 19,952,410 – 19,952,518
Length 108
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 76.80
Mean single sequence MFE -29.86
Consensus MFE -20.11
Energy contribution -20.42
Covariance contribution 0.31
Combinations/Pair 1.20
Mean z-score -1.60
Structure conservation index 0.67
SVM decision value 0.95
SVM RNA-class probability 0.888427
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19952410 108 - 27905053
----UCCAAUAAUUAAUUUUACAAUUAGUUUACCUGUAGGGUUUGCAGUUUGCUGCGUAGCUCCGACUUUUCCCGCUGCGAGGACUUCAGCUGCCUGCUGAGCUCCUCCUCG
----..........(((((((((...........))))))))).((((....))))(((((...((....))..)))))(((((.((((((.....)))))).))))).... ( -31.40)
>DroPse_CAF1 15326 96 - 1
---------------AUCACAC-GGAAACCCACCUGAAGUGUCUGCAGUUUGCUACGAAGCUCGGACUUCUCCCUCUGGGAGGAUUUCAGCUGCCUGCUGAGCUCUUCCUCG
---------------.(((...-((....))...)))...(((((.(((((......))))))))))..........(((((((.((((((.....)))))).))))))).. ( -28.90)
>DroSim_CAF1 11839 108 - 1
----UCCAAUAAUUAAUUUAACAAUUAGCUUACCUGUAGGGUCUGCAGUUUGCUGCGUAGCUCCGACUUUUCCCGCUGCGAGGACUUCAGCUGCCUGCUGAGCUCCUCCUCG
----.....................((((..((.(((((...)))))))..)))).(((((...((....))..)))))(((((.((((((.....)))))).))))).... ( -31.20)
>DroEre_CAF1 12105 112 - 1
GAUCAAAAAUAAUAAACUAAACAAUUAAUUUACCUGCAGGGUCUGCAGCUUGCUGCGUAGCUCCGACUUCUCCCGCUGCGAGGACUUCAGCUGCCUGCUGAGCUCCUCCUCG
((((........((((.(((....))).)))).......)))).((((....))))(((((...((....))..)))))(((((.((((((.....)))))).))))).... ( -30.16)
>DroAna_CAF1 13699 97 - 1
-----------AUAUAUUUUCC----AACCCACCUGUAGAGUCUGCAGUUUGCUGCGCAACUCAGAUUUCUCUCUUUGGGAGGACUUCAGUUGCCUGCUGAGCUCGUCCUCG
-----------...........----...(((...(..(((((((.((((.((...)))))))))))))..)....)))((((((((((((.....))))))...)))))). ( -28.60)
>DroPer_CAF1 15798 96 - 1
---------------AUCAUAC-GGAAACCCACCUGAAGUGUCUGCAGUUUGCUACGAAGCUCGGACUUCUCCCUCUGGGAGGAUUUCAGCUGCCUGCUGAGCUCUUCCUCG
---------------.(((...-((....))...)))...(((((.(((((......))))))))))..........(((((((.((((((.....)))))).))))))).. ( -28.90)
>consensus
___________AU_AAUUAUAC_AUUAACCCACCUGUAGGGUCUGCAGUUUGCUGCGUAGCUCCGACUUCUCCCGCUGCGAGGACUUCAGCUGCCUGCUGAGCUCCUCCUCG
......................................((((.(((((....)))))..))))................(((((.((((((.....)))))).))))).... (-20.11 = -20.42 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:53 2006