| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,951,507 – 19,951,627 |
| Length | 120 |
| Max. P | 0.778216 |
| Location | 19,951,507 – 19,951,627 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.89 |
| Mean single sequence MFE | -44.80 |
| Consensus MFE | -24.14 |
| Energy contribution | -25.48 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778216 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19951507 120 + 27905053 UAAGAAGCAACUCCAAGAUGCUGCUGACCAGCAGCUACGAUGCGAUGCCAAGCUGGGCAAACUGCAGGCCAUGCUAAGAAAUCUCCAAGAGGAGAAGAGCAAUCUGGAAACGGACCGCAA .....((((...((.....((((((....)))))).....((((.((((......))))...))))))...))))......(((((....)))))...((..((((....))))..)).. ( -39.70) >DroVir_CAF1 15292 120 + 1 CCGGAAGCAGCUGCAGGAUGCCGCAGAGCAGCAGCUGCGCUGCGACGCUAAGCUGGGCAAGCUGCAGACGAUACUGCGCAACCUGCAGGAGGAGCGAAGCAAUCUGGAGACGGAUCGCAA (((....)..(((((((.(((.((((.(((((......)))))..((((.((((.....))))..)).))...))))))).)))))))..))......((.(((((....))))).)).. ( -52.20) >DroPse_CAF1 14420 120 + 1 CAAGAAGCAGCUCCAGGAUGCGGCCGAGCAGCAGCUGCGCUGCGAUGCGAAGUUAAGCAAACUCCAGGCCAUGCUCCGGAACCUGCAGGAGGAGAAGAGCAACCUGGAGACGGAGCGCAA ......((.((((((((.(((((((..(((((......)))))..(((........))).......))))...((((....((....)).))))....))).)))(....)))))))).. ( -48.90) >DroGri_CAF1 14208 120 + 1 AAAGAAACAACUGCAGGAUGCCGCCGAGCAGCAGUUGCGCUGUGACGCCAAGCUGGGCAAGUUGCAGGCGAUGCUGCGCAACCUGCAGGAGGAGAAGAGCAAUCUGGAGACGGAUCGCAA .......(..(((((((.(((......((((((.((((.(((..(((((......)))..))..)))))))))))))))).)))))))..).......((.(((((....))))).)).. ( -54.40) >DroWil_CAF1 13090 120 + 1 GAAAAAGCAACUGCAGGAUGCGGCCGAACAACAACUUCGUUGUGAUGCCAAGAUGGGAAAACUUCAGGGAAUGCUAAGAAAUCUACAGGAGGAGAAGAGCAAUCUGGAAACGGAUCGCAA ......((....))....((((((((.(((((......)))))..(.((.....)).)....((((((...((((......(((......)))....)))).))))))..))).))))). ( -28.00) >DroMoj_CAF1 14722 120 + 1 CAAAAAACAGCUCCAGGAUGCCGCCGAGCAGCAGAUGCGCUGCGACGCCAAGAUGGGCAAGCUGCAGGGCAUGCUGCGCAACCUGCAGGAGGAGAAGAGCAAUCUGGAAACGGAUCGUAA ......((.((((.......((.((..((((((..(((.(((((..(((......)))....))))).)))))))))((.....)).)).))....)))).(((((....))))).)).. ( -45.60) >consensus CAAGAAGCAACUCCAGGAUGCCGCCGAGCAGCAGCUGCGCUGCGACGCCAAGCUGGGCAAACUGCAGGCCAUGCUGCGCAACCUGCAGGAGGAGAAGAGCAAUCUGGAAACGGAUCGCAA ..........((.(....((((((...(((((......)))))...)).......))))..(((((((.............)))))))..).))....((.(((((....))))).)).. (-24.14 = -25.48 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:52 2006