Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,636,925 – 2,637,042 |
Length | 117 |
Max. P | 0.999293 |
Location | 2,636,925 – 2,637,042 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.25 |
Mean single sequence MFE | -32.58 |
Consensus MFE | -22.44 |
Energy contribution | -26.66 |
Covariance contribution | 4.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.78 |
Structure conservation index | 0.69 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688371 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2636925 117 + 27905053 CGGCCUCCCAAAACUCGCUAAUGCAGUGCAAAUAUC---GAACAUUAAAUAUAUUAUGGAAAUAAUAUAUCUGUCGUUAAUUUUUUGCACCCAAGCGAGCGAAGGAUUUUUCAGUUGGAG ....((((.....((((((..((..(((((((....---.(((..((.(((((((((....))))))))).))..))).....))))))).)))))))).((((....))))....)))) ( -31.10) >DroSec_CAF1 37241 120 + 1 CGACCUCCCAAAACUCGCUAAUGCAGCGCAAAUAUUUGGCAACAUUAAAUAUAUUAUGGAAAUAAUAGAUCUGUCGUUAAUUUUUUGCACUCAAGCGAGCGAAGGAUUUUUCGGUUGGGA .....((((((..((((((..((.((.(((((...(((((.(((.......((((((....))))))....))).)))))...))))).))))))))))(((((....))))).)))))) ( -34.40) >DroSim_CAF1 25452 120 + 1 CGGCCUCCCAAAACUCGCUAAUGCAGUGCAAAUAUUUGGCAACAUUAAAUAUAUUAUGGAAAUAAUAGAUCUGUCGUUAAUUUUUUGCACUCAAGCGAGCGAAGGAUUUUUCGGUUGGGA .....((((((..((((((..((.((((((((...(((((.(((.......((((((....))))))....))).)))))...))))))))))))))))(((((....))))).)))))) ( -38.30) >DroEre_CAF1 27959 120 + 1 CGGCCUCCCAAAACUCGCUAAUGCAGUGCAAAUAUUUGGCAACAUUAAAUAUAUUAUGGAAAUAAUAGAUCUGUCGUUAAUUUCUUGCAGCCAAGCGAGCGAAGGAUUUUUCGGUUGGGA .....((((((..((((((...((..(((((..(.(((((.(((.......((((((....))))))....))).))))).)..)))))))..))))))(((((....))))).)))))) ( -32.30) >DroYak_CAF1 18892 111 + 1 ---------AAAACUUGCUAAUGCAGUGCAAAUAUUUGGCAACAUUAAAUAAAUUAUGAAAAUAAUAGAUCUGUCGUUAAUUUUUUGCACCCAAGCGAGCGAAGGAUUUUUCGGUUGGGA ---------.....((((....))))((((((...(((((.(((....((..(((((....)))))..)).))).)))))...))))))(((((.(((((....)....)))).))))). ( -26.80) >consensus CGGCCUCCCAAAACUCGCUAAUGCAGUGCAAAUAUUUGGCAACAUUAAAUAUAUUAUGGAAAUAAUAGAUCUGUCGUUAAUUUUUUGCACCCAAGCGAGCGAAGGAUUUUUCGGUUGGGA .....((((((..((((((......(((((((...(((((.(((.......((((((....))))))....))).)))))...)))))))...))))))(((((....))))).)))))) (-22.44 = -26.66 + 4.22)
Location | 2,636,925 – 2,637,042 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.25 |
Mean single sequence MFE | -30.33 |
Consensus MFE | -26.06 |
Energy contribution | -27.18 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.10 |
Mean z-score | -2.74 |
Structure conservation index | 0.86 |
SVM decision value | 3.49 |
SVM RNA-class probability | 0.999293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2636925 117 - 27905053 CUCCAACUGAAAAAUCCUUCGCUCGCUUGGGUGCAAAAAAUUAACGACAGAUAUAUUAUUUCCAUAAUAUAUUUAAUGUUC---GAUAUUUGCACUGCAUUAGCGAGUUUUGGGAGGCCG ((((....(((......)))(((((((((((((((((.....((((..(((((((((((....)))))))))))..)))).---....)))))))).))..)))))))....)))).... ( -34.20) >DroSec_CAF1 37241 120 - 1 UCCCAACCGAAAAAUCCUUCGCUCGCUUGAGUGCAAAAAAUUAACGACAGAUCUAUUAUUUCCAUAAUAUAUUUAAUGUUGCCAAAUAUUUGCGCUGCAUUAGCGAGUUUUGGGAGGUCG ((((((..(((......)))(((((((((((((((((.......((((((((.((((((....)))))).)))...))))).......)))))))).))..))))))).))))))..... ( -33.44) >DroSim_CAF1 25452 120 - 1 UCCCAACCGAAAAAUCCUUCGCUCGCUUGAGUGCAAAAAAUUAACGACAGAUCUAUUAUUUCCAUAAUAUAUUUAAUGUUGCCAAAUAUUUGCACUGCAUUAGCGAGUUUUGGGAGGCCG ((((((..(((......)))(((((((((((((((((.......((((((((.((((((....)))))).)))...))))).......)))))))).))..))))))).))))))..... ( -33.84) >DroEre_CAF1 27959 120 - 1 UCCCAACCGAAAAAUCCUUCGCUCGCUUGGCUGCAAGAAAUUAACGACAGAUCUAUUAUUUCCAUAAUAUAUUUAAUGUUGCCAAAUAUUUGCACUGCAUUAGCGAGUUUUGGGAGGCCG ((((((..(((......)))(((((((..((((((((.......((((((((.((((((....)))))).)))...))))).......))))))..))...))))))).))))))..... ( -31.24) >DroYak_CAF1 18892 111 - 1 UCCCAACCGAAAAAUCCUUCGCUCGCUUGGGUGCAAAAAAUUAACGACAGAUCUAUUAUUUUCAUAAUUUAUUUAAUGUUGCCAAAUAUUUGCACUGCAUUAGCAAGUUUU--------- ..((((.(((............))).))))(((((((.......((((((((..(((((....)))))..)))...))))).......)))))))(((....)))......--------- ( -18.94) >consensus UCCCAACCGAAAAAUCCUUCGCUCGCUUGGGUGCAAAAAAUUAACGACAGAUCUAUUAUUUCCAUAAUAUAUUUAAUGUUGCCAAAUAUUUGCACUGCAUUAGCGAGUUUUGGGAGGCCG ((((((..(((......)))(((((((((((((((((.......((((((((.((((((....)))))).)))...))))).......)))))))).))..))))))).))))))..... (-26.06 = -27.18 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:02 2006