| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,948,883 – 19,949,003 |
| Length | 120 |
| Max. P | 0.531038 |
| Location | 19,948,883 – 19,949,003 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.50 |
| Mean single sequence MFE | -29.11 |
| Consensus MFE | -19.15 |
| Energy contribution | -18.40 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531038 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19948883 120 - 27905053 GCAGAUCGCACUUCUCCAGCAACAGCUUGUCCAGAUCGUACUCCAGGUCGGACUUCUGUUUCUCGAGCAGAUUGAUCAAAUUAUCGGACUCGAUGCGCUGCUGCUCGAGAAGAUCACGAU ....((((..((((((.((((.((((..((((.((((........)))))))).(((((((...)))))))..........(((((....))))).)))).)))).))))))....)))) ( -39.60) >DroVir_CAF1 12619 120 - 1 GCAGUUCGCAUUUGUCCAGCAGCAGCUUGUCCAGAUCGUAUUCUAGAUCGCACUUUUGCUUCUCCAGCAAAUUAAUCAAAUUGUCCGAUUCGAUGCGCUGCUGCUCCAGAAGAUCCCGAU ((.....)).((((...(((((((((.......((((........))))((...((((((.....))))))...(((.((((....)))).)))))))))))))).)))).......... ( -32.70) >DroPse_CAF1 11741 120 - 1 GCAAAUCGCACUUCUCCAUCAGCAAUUUAUCGAGAUCAUACUCCAGGUCCGACUUCUGUUUCUCCAGCAGACAAAUCAGGUUGUCCGACUCGAUGCGCUGCUGCUCCAACAAAUCCCGGU ((.....))......((............(((.((((........)))))))....((((....((((((....(((..(((....)))..)))...))))))....))))......)). ( -25.10) >DroGri_CAF1 11564 120 - 1 GCAGAUCACAUUUCUCCAACAACAGCUUGUCCAAGUCGUACUCCAGAUCGCAUUUUUGCUUCUCCAGCAGGCAUAUCAAAUUGUCCGACUCAAUGCGCUGCUGUUCCAAAAGAUCCCGAU ....(((..............((.((((....)))).))......(((((((....))).....((((((((((..................)))).))))))........))))..))) ( -22.37) >DroWil_CAF1 10486 120 - 1 GGAGAUCACAUUUCUCUAACAACAAUUUAUCCAGAUCAUAUUCCAAAUCGGACUUUUGUUUUUCCAGCAAGCAAAUCAAAUUAUCAGACUCGAUUCGUUGUUGUUCCAAAAGAUCCCGAU ((.((((..........(((((((((..(((.((.((....(((.....)))..(((((((.......)))))))...........)))).)))..)))))))))......))))))... ( -22.29) >DroMoj_CAF1 11783 120 - 1 GCAGAUCACAUUUGUCCAGCAGCAGCUUAUCCAGGUCGUAUUCGAGAUCGCAUUUCUGUUUCUCCAGCAAAUUGAUCAAAUUGUCCGAUUCAAUGCGCUGCUGCUCCAACAGAUCUCGGU (.(((((.....(((..(((((((((.(((...(((((.((....(((((.(((((((......))).))))))))).....)).)))))..))).)))))))))...)))))))))... ( -32.60) >consensus GCAGAUCACAUUUCUCCAGCAACAGCUUAUCCAGAUCGUACUCCAGAUCGCACUUCUGUUUCUCCAGCAAACAAAUCAAAUUGUCCGACUCGAUGCGCUGCUGCUCCAAAAGAUCCCGAU .................(((((((((.((((..((((........)))).....((((((.....))))))....................)))).)))))))))............... (-19.15 = -18.40 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:51 2006