Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,940,942 – 19,941,045 |
Length | 103 |
Max. P | 0.559207 |
Location | 19,940,942 – 19,941,045 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 79.09 |
Mean single sequence MFE | -41.15 |
Consensus MFE | -25.94 |
Energy contribution | -25.58 |
Covariance contribution | -0.35 |
Combinations/Pair | 1.56 |
Mean z-score | -1.39 |
Structure conservation index | 0.63 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559207 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19940942 103 - 27905053 CAUCUGGAGGUCCUGGGCUGUGCCAGUUUCAUACCCGGCGUGCAGGAGACACUGCAGCUGGAUGACUGCCUCCAGCUCUUUCAGAGAUGCGAACAGCAACAGA ...((((((((.((((......))))..((((..(((((.(((((......))))))))))))))..))))))))(((.....))).(((.....)))..... ( -40.20) >DroVir_CAF1 807 103 - 1 CACUUGGAGCUGUUGGGCUGCGCCAGUUUUGUGCCGGGCGCACGGGAGACCCAGCAGCUGGACGACUGCCUGCAGCUGUUUCAGCGCUGCGAGGCGCAGCAGA .......((((((((((.((((((.((.....))..))))))(....).))))))))))......((((.(((.((((...))))(((....)))))))))). ( -45.80) >DroPse_CAF1 792 103 - 1 CACCUGGAGGUGCUCGGCUGCGCCAGCUUUGUGCCCAGCGUGCAGGAGACCCAGCAGCUGGACGAUUGCCUGCAGCUCUACCAGCGCUGCGAGGCCCAGCAGA ...((((.(((((......)))))....((((..(((((.(((.((....)).))))))))))))..(((((((((.(.....).))))).)))))))).... ( -43.40) >DroGri_CAF1 810 103 - 1 CAUCUGGAGCUGUUGGGCUGCGCCAGCUUUGUGCCUGGUGCACGGGAGACCCAACAGCUGGAUGACUGCCUGGAGCUGUUCCAGCGCUGUGAAUCGCAACAGA ..((((.((((((((((.(((((((((.....).))))))))(....).)))))))))).(((.((.((((((((...)))))).)).))..)))....)))) ( -46.60) >DroWil_CAF1 783 103 - 1 CAUUUGGAGUUGUUGGGUUGCGCCAGUUUUGUUCCCGGAGUCCAAGAAACCCAGCAACUGGACGAUUGCCUGCAACUGUUUCAGCGUUGUGAGGCUCAACAAA ..((((.(((((((.((((((.....(((((..(.....)..)))))......)))))).)))))))(((((((((.((....))))))).))))....)))) ( -31.20) >DroAna_CAF1 913 103 - 1 CACCUGGAGGUGUUGGGAUGCGCCAGCUUUAUUCCGAGCGUGCAGGAAACCCUGCAACUGGACGAUUGUCUGCAGCUCUUCCAGAGAUGCGAGCAGCAACAGA ...(((((((.((((((((.(((((((((......)))).((((((....))))))..))).))...)))).)))).))))))).(.(((.....))).)... ( -39.70) >consensus CACCUGGAGGUGUUGGGCUGCGCCAGCUUUGUGCCCGGCGUGCAGGAGACCCAGCAGCUGGACGACUGCCUGCAGCUCUUCCAGCGCUGCGAGGCGCAACAGA ...(((((((.(((((((..((((((((.(((((.....)))))(....).....)))))).))...)))..)))).)))))))..((((........)))). (-25.94 = -25.58 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:47 2006