Locus 7465

Sequence ID 3R_DroMel_CAF1
Location 19,937,381 – 19,937,475
Length 94
Max. P 0.623254
window12068

overview

Window 8

Location 19,937,381 – 19,937,475
Length 94
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 84.01
Mean single sequence MFE -23.53
Consensus MFE -17.72
Energy contribution -18.52
Covariance contribution 0.79
Combinations/Pair 1.16
Mean z-score -1.90
Structure conservation index 0.75
SVM decision value 0.18
SVM RNA-class probability 0.623254
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19937381 94 - 27905053
GGCGCUCCGAUCCUUCAUCUCACAUUCCAAUUUUAGAUAUCCACCUGCAACCACUGCAGCCCCCGCGGCACCAGGACCUCAGCCAGCCGCCAAU--
((((((..((....))...................((..(((...((((.....))))(((.....)))....)))..))....)).))))...-- ( -19.60)
>DroSec_CAF1 2266 94 - 1
GGCACUGCGGUCCUUCAUCUCACAUUCCAAUUUUAGAUAUCCACCUGCAACCGCUGCAGCCCCCGCGGCACCAGGACCACAGCCAGCCGCCAAU--
(((.(((.((((((..((((..............))))..............(((((.......)))))...)))))).)))...)))......-- ( -26.04)
>DroSim_CAF1 2267 94 - 1
GGCACUGCGGUCCUUCAUCUCACAUUCCAAUUUUAGAUAUCCACCUGCAACCGCUGCAGCCCCCGCGGCACCAGGACCACAGCCAGCCGCCAAU--
(((.(((.((((((..((((..............))))..............(((((.......)))))...)))))).)))...)))......-- ( -26.04)
>DroEre_CAF1 2332 94 - 1
GGCACUGCGGUCCCUCAUCUCACAUUCCAAUUUCAGAUAUGCACCUGCAAACGCUGCAGCUUCCGCGGCACCAGGACCUCAGCCAGCCGCCAAU--
(((.(((.(((((..........................(((....)))...(((((.......)))))....))))).)))...)))......-- ( -27.70)
>DroYak_CAF1 2354 94 - 1
GGCACUGCGGUCCUUCAUCACACAUUCCAAUUUUAGAUAUCCACCUGCAAACGCUGCAGCUUCCACGGCACCAGGACCUCAGCCAGCCGCCAAU--
(((.(((.((((((...............................((((.....))))(((.....)))...)))))).)))...)))......-- ( -23.30)
>DroAna_CAF1 2165 84 - 1
GGCUCUACGAUCCUUUAUCACACAUUCCAACUUCAGAUAUCAGCCUGCA------GCAGCCGCCGC------UGGAGUCCCGCCAGCUGCUCCUCC
((((....(((.....)))...........((.(((........))).)------).))))((.((------(((.......))))).))...... ( -18.50)
>consensus
GGCACUGCGGUCCUUCAUCUCACAUUCCAAUUUUAGAUAUCCACCUGCAACCGCUGCAGCCCCCGCGGCACCAGGACCUCAGCCAGCCGCCAAU__
(((.(((.(((((....................(((........))).....(((((.......)))))....))))).)))...)))........ (-17.72 = -18.52 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:42 2006