Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,919,710 – 19,919,806 |
Length | 96 |
Max. P | 0.671461 |
Location | 19,919,710 – 19,919,806 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 69.72 |
Mean single sequence MFE | -32.02 |
Consensus MFE | -11.72 |
Energy contribution | -13.80 |
Covariance contribution | 2.08 |
Combinations/Pair | 1.24 |
Mean z-score | -1.87 |
Structure conservation index | 0.37 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19919710 96 + 27905053 UGCCACGCCCC------CAGAAAGGAAACGCCUUGGACAAAUUGUCCCACAGGUCGGAA-----GGGGGA--UGGGCGGUGGCUAAAGCCACAACAACACACAAGGAGC .(((...((((------(.....(....)((((.((((.....))))...)))).....-----))))).--..))).(((((....)))))................. ( -38.10) >DroGri_CAF1 45285 96 + 1 GCACACGCUCC------CUCUCAGGAAGCGCACUGGACAAAUUGGGCCCAAAUGCAAGGGAUAAGAGACA--AG-AAG-CUCCUU-ACUAACAACAGCC--CAAUAAAU .....((((.(------(.....)).))))..........(((((((((........)).....(((...--..-...-)))...-..........)))--)))).... ( -20.10) >DroSim_CAF1 33393 96 + 1 UGCCACGCCCC------CAGAAAGGAAACGCCUUGGACAAAUUGUCCCACAAGUCGGCA-----GGGGGA--UGGGCGGUGGCUAAAGCCACAACAACACACAAGGAGC .(((...((((------(.....(....)(((..((((.....))))........))).-----))))).--..))).(((((....)))))................. ( -36.90) >DroEre_CAF1 33244 94 + 1 UGCCACGCCCC------CAGAAAGGAAACGCCUUGGACAAAUUGUCCCACAAGUCGGCG-----GGGGGA--UGGGCGGUGGCUAAAGCCGCAACAGCA--CAACGAGC .(((...((((------(.....(....)(((..((((.....))))........))).-----))))).--..))).(((((....))))).......--........ ( -36.30) >DroYak_CAF1 34162 100 + 1 UGCCACGCCCC------CAGAAAGGAAACGCCUUGGACAAAUUGUCCCACAACUCGACGGCCG-GGGGGAGUGGGGCAGUGUAUAAAGCCACAACAGCA--CAAGGAGC ..((((.((((------(.....(....)(((..((((.....))))..(.....)..)))..-))))).))))(((..........))).........--........ ( -31.70) >DroAna_CAF1 35312 95 + 1 UGCCACGCCUCCGACCGCCGGAAGGAAACGCCUUGGACAAAUUGUCCCACAAGUCGGUG-----GAUGGG--CAAGCAGCCGCCUAAACCACAACCGCC-------ACC ((((...((.(((((..((....)).........((((.....)))).....))))).)-----)...))--)).((....))................-------... ( -29.00) >consensus UGCCACGCCCC______CAGAAAGGAAACGCCUUGGACAAAUUGUCCCACAAGUCGGCG_____GGGGGA__UGGGCGGUGGCUAAAGCCACAACAGCA__CAAGGAGC ((((...((((............(....).....((((.....))))..................)))).....))))((((......))))................. (-11.72 = -13.80 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:39 2006