| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,917,985 – 19,918,095 |
| Length | 110 |
| Max. P | 0.908552 |
| Location | 19,917,985 – 19,918,095 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.00 |
| Mean single sequence MFE | -36.85 |
| Consensus MFE | -18.50 |
| Energy contribution | -20.03 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.50 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908552 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19917985 110 + 27905053 AAGGGCAUG----GGUUACCAGCUUGGGGCUACGCCCACUC------AUGUGAAAUCACCGCCCAGUUAAGCGCGGGCGAUUCAAAUAAAUUGGCCAACUUAACUAGAAAAUAGCAGCAG ..((((.((----(((....(((.....)))..)))))...------..(((....))).))))(((((((...((.(((((......))))).))..)))))))............... ( -32.30) >DroSec_CAF1 30853 110 + 1 AAGGGCAUG----GGUAACCAGCUCGGGGUUACGCCCACCC------AUGUGAAAUCACCGCCCAGUUAAGUGCGGGCGAUUCAAAUAAAUUGGCCAACUUAACUAGACAAUCGCAGCAG ..(((((((----(((...(.....)(((.....)))))))------))(((....))).))))((((((((..((.(((((......))))).)).))))))))............... ( -37.40) >DroSim_CAF1 31731 110 + 1 AAGGGCAUG----GGUAACCAGCUCGGGGUUACGCCCACCC------AUGUGAAAUCACCGCCCAGUUAAGUGCGGGCGAUUCAAAUAAAUUGGCCAACUUAACUAGACAAUCGCAGCAG ..(((((((----(((...(.....)(((.....)))))))------))(((....))).))))((((((((..((.(((((......))))).)).))))))))............... ( -37.40) >DroEre_CAF1 31468 110 + 1 AAGGGCAUG----GGUAGCCAGCUUGGGGUUACAACCACCC------AUGUGAAAACACCGCCCAGUUAAGUGCGGGCGAUUCACAUAAAUUGGCCAACUUAACUAGACAAUCGCAGCAG ..(((((((----(((..((.....))(((....)))))))------))((....))...))))((((((((..((.(((((......))))).)).))))))))............... ( -37.50) >DroYak_CAF1 32397 110 + 1 AAGGGCAUG----GGUAGCUGGCUUGGGCUUACACCCAACC------AUGCGAAAUCAACGCCCAGUUAAGUGCGGGCGAUUCACAUAAAUUGGCCAACUUAACUAGACAAUCGCAGCAG ..((((...----(((.(((((.(((((......)))))))------).))...)))...))))((((((((..((.(((((......))))).)).))))))))............... ( -38.10) >DroAna_CAF1 33237 105 + 1 GAGGGGGCGAAAUGGCAACCAUUUCUGGAGCA-GUCCACCCUCUGGUAUCUGAUAUAGUUGGUCAGUUAAACG--------------GAAUUGGCCAGCAUAGCUGGAGAAACGCAGCGU (((((...(((((((...)))))))((((...-.)))))))))..............(((((((((((.....--------------.)))))))))))...((((........)))).. ( -38.40) >consensus AAGGGCAUG____GGUAACCAGCUCGGGGUUACGCCCACCC______AUGUGAAAUCACCGCCCAGUUAAGUGCGGGCGAUUCAAAUAAAUUGGCCAACUUAACUAGACAAUCGCAGCAG ..((((.......((...))......(((.....))).......................))))((((((((..((.(((((......))))).)).))))))))............... (-18.50 = -20.03 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:38 2006