Locus 7461

Sequence ID 3R_DroMel_CAF1
Location 19,912,242 – 19,912,354
Length 112
Max. P 0.551630
window12063

overview

Window 3

Location 19,912,242 – 19,912,354
Length 112
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 86.72
Mean single sequence MFE -25.78
Consensus MFE -18.06
Energy contribution -18.50
Covariance contribution 0.44
Combinations/Pair 1.15
Mean z-score -1.50
Structure conservation index 0.70
SVM decision value 0.04
SVM RNA-class probability 0.551630
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19912242 112 - 27905053
UCUUAAUUGCGUUGACGAGUUAACGAAUAU----A-GUGUUCACACACAUAUUGCGCAUACGACACGUGUACAGAAGUUUGUGCGUUAAUUGCAUCAAUCAAUUGGAAUUAAUACGA
(((.(((((.(((((.((((((((.(((((----.-((((....)))))))))(((((.((..(.........)..)).)))))))))))).).))))))))))))).......... ( -25.10)
>DroSim_CAF1 26403 113 - 1
UCUAAAUUGCGUUGACGAGUUAACGAGUUA----ACACACACACACACAUAUUGCGCAUACGACACGUGUACAGAAGUUUGUGCGUUAAUUGCAUCAAUCAAUUGGAAUUAAUACGA
(((((.(((.(((((.(((((((((.((..----....)).((((.((...(((..(((.......)))..)))..)).)))))))))))).).))))))))))))).......... ( -21.50)
>DroEre_CAF1 25817 114 - 1
UCUAAAUUGCGUUGAUGAGUUAACGCAAAUAUGUA-GAGUU--CAGACAUAUUGCGCAUACGACAUGUGUACGAAAGUUUGUGCGUUAAUUGCAUCAAUCAAUUGGAAUUAAUACGA
(((((.(((.((((((((((((((((((((((((.-.....--...)))))))((((((.....))))))((....))...)))))))))).))))))))))))))).......... ( -33.70)
>DroYak_CAF1 26565 110 - 1
UCCAAAUUGCGUUGACGAGUUAACGUAAAU----A-GAGUU--CAACCAUAUUGCGCAUACGACAUGUGUACAGUAGUUUGUGCGUUAAUUGCAUCAAUCAAUUGAAAUUAAUACGA
......(((((((((....)))))))))..----.-...((--(((...(((((..((((.....))))..)))))(.(((((((.....)))).))).)..))))).......... ( -22.80)
>consensus
UCUAAAUUGCGUUGACGAGUUAACGAAAAU____A_GAGUU__CACACAUAUUGCGCAUACGACACGUGUACAGAAGUUUGUGCGUUAAUUGCAUCAAUCAAUUGGAAUUAAUACGA
(((.(((((.(((((.(((((((((((.........................(((((((.....)))))))(((....))))))))))))).).))))))))))))).......... (-18.06 = -18.50 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:37 2006