Locus 7460

Sequence ID 3R_DroMel_CAF1
Location 19,909,112 – 19,909,202
Length 90
Max. P 0.617273
window12062

overview

Window 2

Location 19,909,112 – 19,909,202
Length 90
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 80.11
Mean single sequence MFE -17.39
Consensus MFE -11.60
Energy contribution -12.29
Covariance contribution 0.69
Combinations/Pair 1.05
Mean z-score -1.40
Structure conservation index 0.67
SVM decision value 0.17
SVM RNA-class probability 0.617273
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19909112 90 + 27905053
AA-AAUUACAAGCAGACAAGCAGAAAAUCCAUCGAUUGAUUCAC--ACAAAUGCCCUGCA---GAGCAUC----------AGCUUCCCGCAUGUUUGUCAC--CCAC-C
..-...........(((((((((((((((....))))..)))..--..........(((.---((((...----------.))))...)))))))))))..--....-. ( -16.80)
>DroSec_CAF1 22330 95 + 1
AA-AAUUACAAGCAGACAAGCAGAAAAUCCAUCGAUUGAUUCAC--ACAAAUGCCCUGCAGAAGAGCUUC----------AGCUUCCCGCAUGUUUGUCACAUCCAC-C
..-...........(((((((((((((((....))))..)))..--..........(((.(..((((...----------.))))..))))))))))))........-. ( -17.60)
>DroSim_CAF1 23308 92 + 1
AA-AAUUACAAGCAGACAAGCAGAAAAUCCAUCGAUUGAUUCAC--ACAAAUGCCCUGCA---GAGCUUC----------AGCUUCCCGCAUGUUUGUCACAUCCAC-C
..-...........(((((((((((((((....))))..)))..--..........(((.---((((...----------.))))...)))))))))))........-. ( -17.00)
>DroEre_CAF1 22748 100 + 1
AA-AAUUACAAGCAGACAAGCAGAAAAUCCAUCGAUUGAUUCGC--ACAAAUGCCCUGCA---GAGCCUCGGAGCUUCAGAGCUUCCCCCAUGUUUGUCAG--CCAC-C
..-........((.(((((((((..((((........))))..)--......((.(((.(---(..(....)..)).))).))........)))))))).)--)...-. ( -21.40)
>DroYak_CAF1 23377 90 + 1
AA-AAUUACAAGCAGACAAGCAGAAAAUCCAUCGAUUGAUUCAC--ACAAAUGCCCUGCA---GAGCUUC----------AGCUUCCCGCAUGUUUGUCAG--CCAC-C
..-........((.(((((((((((((((....))))..)))..--..........(((.---((((...----------.))))...))))))))))).)--)...-. ( -18.40)
>DroAna_CAF1 24438 81 + 1
AAAAAAUAAAACCAGACAAGCAGAAAAUCCAGCCAUUGAAACAGUUCCUCCUGCCCUGC--------------------------UCCGAAUGCUUGUCGU--ACAUCG
..............((((((((........(((........(((......)))....))--------------------------).....))))))))..--...... ( -13.12)
>consensus
AA_AAUUACAAGCAGACAAGCAGAAAAUCCAUCGAUUGAUUCAC__ACAAAUGCCCUGCA___GAGCUUC__________AGCUUCCCGCAUGUUUGUCAC__CCAC_C
..............((((((((((.((((....))))...))..............(((....((((..............))))...))))))))))).......... (-11.60 = -12.29 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:36 2006