Locus 7456

Sequence ID 3R_DroMel_CAF1
Location 19,880,040 – 19,880,145
Length 105
Max. P 0.812106
window12056

overview

Window 6

Location 19,880,040 – 19,880,145
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 79.19
Mean single sequence MFE -26.20
Consensus MFE -20.20
Energy contribution -20.40
Covariance contribution 0.20
Combinations/Pair 1.21
Mean z-score -1.63
Structure conservation index 0.77
SVM decision value 0.65
SVM RNA-class probability 0.812106
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19880040 105 - 27905053
AUGAAUGCCGGCUGUCAGCUGUUUAACACAGUUCACCUCGUUUGUACAAUGAGGUGAAUUUAACUGAACGUUCAUUUAUCGAGUUGGCGCGAAUUUUUAAAAUUA
......(((((((.((((((((.....))))(((((((((((.....))))))))))).....)))).((.........)))))))))................. ( -29.00)
>DroSec_CAF1 10287 105 - 1
AUGAAUGCCGGCUGUCAGCUGUCUAACAAAGUUCACCUCGAUUGCACAAUGAGGUGAAUUUAAGUGAAGGUUCACAUAUCGAAUUGGCGCGAACUUUUAAAAAUA
.((...(.((((.....)))).)...))(((((((((((.(((....))))))))))))))...(((((((((.(.((......))..).)))))))))...... ( -26.30)
>DroSim_CAF1 10514 105 - 1
AUGAAUGCCGGCUGUCAGCUGUUUAACACAGUUCACCUCGAUUGCACAAUGAGGUGAAUUUAAGUGAAGGUCCACUUAUCGAAUUGGCGCGAACUUUUAAAAAUA
......(((((...((.(((((.....)))))(((((((.(((....))))))))))...((((((......))))))..)).)))))................. ( -25.90)
>DroEre_CAF1 10984 97 - 1
AUGAAUGCCGGCUGUCAGCUGUUCAUCCCAAUUCACCUCAU-UGCACAGUGUGGUGAGUUUAGCAGAUAG-------GUUGAUUUGGCGCGCACUUUUAAAAUUA
.((..((((((..(((((((..((.....((((((((.(((-(....)))).)))))))).....))..)-------))))))))))))..))............ ( -28.90)
>DroYak_CAF1 10669 85 - 1
AUGAAUGCCGGCUGUCAGCUGUUCAACCCAAUUCACCUCAUUUGUACAGUGUGGUGAGUUUA--------------------AUUGGCGCGCACUUUUAAAAUUA
.((..(((((((.....))).........((((((((.((((.....)))).))))))))..--------------------...))))..))............ ( -20.90)
>consensus
AUGAAUGCCGGCUGUCAGCUGUUUAACACAGUUCACCUCGUUUGCACAAUGAGGUGAAUUUAACUGAAGGU_CA__UAUCGAAUUGGCGCGAACUUUUAAAAUUA
......((((((.....))).........(((((((((((((.....))))))))))))).........................)))................. (-20.20 = -20.40 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:30 2006