| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,871,149 – 19,871,258 |
| Length | 109 |
| Max. P | 0.562352 |
| Location | 19,871,149 – 19,871,258 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 82.06 |
| Mean single sequence MFE | -32.83 |
| Consensus MFE | -22.82 |
| Energy contribution | -22.02 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.562352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19871149 109 + 27905053 AU--CAGCUUACCUUGAUUUCCUUUUCGAGGAAUAGGCGUUUAUUCAUGGCGGUCAGAGCUGUUGUGGCUGCCUGGUAGUUGGAAUAUUCGAUGAAGGCAUAUGGAUCGUU ..--..(((((((((((........))))))..)))))..........(((((((..((((.....))))((((....((((((...))))))..)))).....))))))) ( -31.80) >DroVir_CAF1 2595 107 + 1 A----AACGCACCUUGAUCUCUUUGUCGAGAAAAACACGUUUGUUCAUGGCCGUCAGGGCGGUGCUGGCCGCCUGAUAAUUGGAAUAUUCGAUGAAGGCAUAGGGAUCAUU .----.........((((((((.((((..(.....).((..(((((......((((((.((((....)))))))))).....)))))..)).....)))).)))))))).. ( -34.10) >DroGri_CAF1 2771 107 + 1 A----UACCCACCUUGAUCUCUUUGUCGAGAAAGACACGUUUGUUCAUGGCGGUCAGGGCGGUGCUAGCCGCCUGAUAGUUGGAAUAUUCGAUGAAGGCAUAGGGAUCAUU .----..(((.((((.(((....((((......)))).(..(((((.((((.((((((.((((....)))))))))).)))))))))..)))).))))....)))...... ( -37.60) >DroWil_CAF1 2040 109 + 1 GA--GAUCUUACCUUAAUCUCCUUUUCGAGAAAUACGCGUUUAUUCAUGGCGGUCAGAGCUGUGGUAGCAGCCUGAUAAUUGGAAUAUUCGAUGAAGGCGUAAGGAUCAUU ..--((((((.......((((......))))..(((((.((((((.......(((((.(((((....)))))))))).....((....)))))))).)))))))))))... ( -33.40) >DroMoj_CAF1 2082 107 + 1 A----UACGAACCUUGAUCUCUUUGUCUAGAAAAACACGUUUGUUCAUGGCCGUCAGUGCAGUGCUGGCCGCCUGGUAAUUGGAAUAUUCGAUAAAGGCAUACGGAUCAUU .----.........((((((...(((((.(.....).((..(((((..(((.((((((.....)))))).))).........)))))..))....)))))...)))))).. ( -27.20) >DroAna_CAF1 1727 111 + 1 AACGAAUCUUACCUUGAUUUCCUUGUCGAGGAACAGACGUUUGUUCAUGGCGGUUAGGGCGGUCGUGGCUGCUUGGUAAGUGGAAUAUUCGAUAAAGGCGUAGGGAUCGUU (((((.(((((((((.((((((((..((((((((((....))))))(((((.((....)).))))).....))))..))).))))).........))).)))))).))))) ( -32.90) >consensus A____AACUUACCUUGAUCUCCUUGUCGAGAAAAACACGUUUGUUCAUGGCGGUCAGGGCGGUGCUGGCCGCCUGAUAAUUGGAAUAUUCGAUGAAGGCAUAGGGAUCAUU ...........(((((.((((......))))......((..(((((......(((((.(((((....)))))))))).....)))))..)).........)))))...... (-22.82 = -22.02 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:29 2006