| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,870,943 – 19,871,056 |
| Length | 113 |
| Max. P | 0.587400 |
| Location | 19,870,943 – 19,871,056 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 80.18 |
| Mean single sequence MFE | -24.07 |
| Consensus MFE | -16.86 |
| Energy contribution | -16.67 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587400 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19870943 113 - 27905053 GCCCUCAUGUUAUU-UUAAUUAUGUAGAACUUAAUUGAUUAUUACCUAUUAAACGAAUG-CUCUUCGCAGGUCAACUGGGCCACCAGUCCCGGCAAUCAGCCGAAGACAGACAUC ......(((((...-(((((((.(.....).)))))))...................((-.(((((...((...(((((....))))).))(((.....))))))))))))))). ( -23.70) >DroVir_CAF1 2489 89 - 1 ---------------------AAAUAUAUAUUUA-----UAUUGACAGUUAAAUUUAUGCCUACUUACAGGUCAACUGGGCCACUAGUCCGGGCAACACGCCCAAGACAGACAUC ---------------------.((((((....))-----))))....(((...................((((.....))))....(((.((((.....))))..))).)))... ( -18.10) >DroSec_CAF1 1221 114 - 1 GCCCUCAUUUUAUUUUUAAUUAGGUAGAACUUAAUUGAUUAUUACCUAUUAAACGAAUG-CUCUUCGCAGGUCAACUGGGCCACCAGUCCCGGCAAUCAGCCGAAGACAGACAUC ((((...........(((((((((.....)))))))))................((.((-(.....)))..))....)))).....(((.((((.....))))..)))....... ( -26.20) >DroSim_CAF1 1724 114 - 1 GCCCUCAUGUUAUUUUUAAUUAGGUAGAACUUAAUUGAUUAUUACCUAUUAAACGAAUG-CUCUUCGCAGGUCAACUGGGCCACCAGUCCCGGCAAUCAGCCGAAGACAGACAUC ......(((((....(((((((((.....)))))))))...................((-.(((((...((...(((((....))))).))(((.....))))))))))))))). ( -27.50) >DroEre_CAF1 1771 110 - 1 GCAC-CAUGAUAUUUUUAAUUAGACAGAAAUUAAUUGAU---UGCCGAUUAAACGAAUU-CUCUUCGCAGGUCAACUGGGCCACCAGUCCCGGCAAUCAGCCGAAGACAGACAUC ((..-..........((((((.......)))))).((((---(((((......((((..-...))))..((...(((((....)))))))))))))))))).............. ( -24.90) >DroYak_CAF1 1630 111 - 1 GCCCUCAUGUUAAUGUUAAUUAGACAUAAAUUAAUUGAU---UACUUAUUAAACGAAUG-CUCUUCGCAGGUCAACUGGGCCACCAGUCCCGGCAAUCAGCCGAAGACAGACAUC (((((((.(((.(((((.....))))).)))....))).---............((.((-(.....)))..))....)))).....(((.((((.....))))..)))....... ( -24.00) >consensus GCCCUCAUGUUAUUUUUAAUUAGAUAGAAAUUAAUUGAUUAUUACCUAUUAAACGAAUG_CUCUUCGCAGGUCAACUGGGCCACCAGUCCCGGCAAUCAGCCGAAGACAGACAUC .....................................................((((......))))...(((.(((((....)))))..((((.....))))..)))....... (-16.86 = -16.67 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:28 2006