Locus 7451

Sequence ID	3R_DroMel_CAF1
Location	19,857,488 – 19,857,580
Length	92
Max. P	0.592683

overview

Window 8

Location	19,857,488 – 19,857,580
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	95.00
Mean single sequence MFE	-29.68
Consensus MFE	-28.36
Energy contribution	-27.84
Covariance contribution	-0.52
Combinations/Pair	1.20
Mean z-score	-1.06
Structure conservation index	0.96
SVM decision value	0.12
SVM RNA-class probability	0.592683
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19857488 92 + 27905053
AAUGUUGCGGAGCAGCUAUGUUGCAGCUUCCGCUUUUUGCGAUGGGGAGCGGAGCAGUGUGGCCAGAGCGGAUUCCUUGAAAAUAUCAACUG
........(((((.(((..((..(((((.(((((((((.....))))))))))))..))..))...))).).))))((((.....))))... ( -28.30)
>DroSec_CAF1 35773 92 + 1
AAUGUUGCGGAGCAGCUAUGUCACAGCUUCCGCUUUUUGCGAUGGGAAGCGGAGCAGUGUGGCCAGAGCGGAUUCCUUGAAAAUAUCAACUG
........(((((.(((..(((((((((.(((((((((.....))))))))))))..))))))...))).).))))((((.....))))... ( -30.60)
>DroSim_CAF1 44258 92 + 1
AAUGUUGCGGAACAGCUAUGUCACAGCUUCCGCUUUUUGCGAUGAGAAGCGGAGCAGUGUGGCCAGAGCGGAUUCCUUGAAAAUAUCAACUG
........((((..(((..(((((((((.(((((((((.....))))))))))))..))))))...)))...))))((((.....))))... ( -31.60)
>DroEre_CAF1 35745 92 + 1
AUUGUUGCGGAGCAGCGAUGUCGCAGCUUCCGCUUUUUGCGAUGGGGAGCGGAGCAGUGUGACCAGAGCGGAUUCCUUGAAAAUAUCAACUG
((((((((...))))))))(((((((((.(((((((((.....))))))))))))..))))))...((..(((...........)))..)). ( -29.30)
>DroYak_CAF1 36027 92 + 1
AAUGUUGCGGAGCAGCGACGUCGCAGCUUCCGCUUUUUGCGAUGGGGAGCGGAGCAGUGUGGCCAGAUCGGAUUCCUUGAAAAUAUCAACUG
...(((((......)))))(((((((((.(((((((((.....))))))))))))..))))))(((...((...))((((.....))))))) ( -28.60)
>consensus
AAUGUUGCGGAGCAGCUAUGUCGCAGCUUCCGCUUUUUGCGAUGGGGAGCGGAGCAGUGUGGCCAGAGCGGAUUCCUUGAAAAUAUCAACUG
........(((((.(((..(((((((((.(((((((((.....))))))))))))..))))))...))).).))))((((.....))))... (-28.36 = -27.84 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:22 2006