Locus 7450

Sequence ID 3R_DroMel_CAF1
Location 19,851,864 – 19,851,961
Length 97
Max. P 0.747136
window12047

overview

Window 7

Location 19,851,864 – 19,851,961
Length 97
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 76.74
Mean single sequence MFE -20.18
Consensus MFE -9.85
Energy contribution -11.08
Covariance contribution 1.22
Combinations/Pair 1.08
Mean z-score -2.02
Structure conservation index 0.49
SVM decision value 0.47
SVM RNA-class probability 0.747136
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19851864 97 + 27905053
UCGAAAAGCUAUCAGCAUAAAUUGGUAUACCCUGGAAAAAUUAGCAACAACUGGGGUAUAU--------ACA-AUCUAGGUUCUCUAAAGACAAUAAUACAUAUA-C
..(((..((.....)).((.((((((((((((..(...............)..))))))))--------.))-)).))..)))......................-. ( -16.36)
>DroSec_CAF1 30204 97 + 1
UCGAAAAGCUAUCAGCGUAAAUUGGUAUACCCUGGAAAAACUAGCAACAACUGGGGUAUAU--------ACA-AUCUAGUUUAUUUAGAGACAAUAUUAGAUAUA-C
.......((.....))....((((((((((((..(...............)..))))))))--------...-.(((((.....)))))..))))..........-. ( -18.56)
>DroSim_CAF1 38691 97 + 1
UCGAAAAGCUAUCAGCAUAAAUUGGUAUACCCUGGAAAAAUUAGCAACACCUGGGGUAUAU--------ACA-AUCUAGGUUAUCUAUAGACAAUAAUAGAUAUA-C
.......((.....)).((.((((((((((((..(...............)..))))))))--------.))-)).))...(((((((........)))))))..-. ( -20.56)
>DroEre_CAF1 30190 98 + 1
UCGAAAAGCUAUCAGCAUAAAUUGGUAUACCCUGGAAAAAUUAGGAACAACUGGGGUAUAC--------ACA-AUGUAGUUGUUAUAUAGCCAAUAUAAGAUAUAAC
.......(((((((((.((.((((((((((((..(...............)..))))))))--------.))-)).))))))....)))))................ ( -24.56)
>DroYak_CAF1 30196 107 + 1
UCGAAAAGCUAUCAGCAUAAAUUGGUAUACCCUGGAAAAAUUAGGAACAAGUGGGGUAUAUUAUAUAAAACAUAUGUAGGUUUUAUAUAGCCAAUAUAAAUUAUAUG
.......((.....))....(((((((((((((...................)))))))..((((((((((........))))))))))))))))............ ( -22.21)
>DroAna_CAF1 25865 83 + 1
UUGAAAAGCCAUCAGCAUAAAUUGCUAUACCCUGGGGAUCUCUGCGAU----GGGG-----------------AUUUAGGGCUUC--AGGAAAAGAAGACUAAUA-A
........(((((((((.....))))...((....))........)))----))..-----------------..((((..((((--.......)))).))))..-. ( -18.80)
>consensus
UCGAAAAGCUAUCAGCAUAAAUUGGUAUACCCUGGAAAAAUUAGCAACAACUGGGGUAUAU________ACA_AUCUAGGUUUUCUAUAGACAAUAAUAGAUAUA_C
.......((.....))........(((((((((((...............))))))))))).............................................. ( -9.85 = -11.08 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:21 2006