| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,635,962 – 2,636,082 |
| Length | 120 |
| Max. P | 0.531116 |
| Location | 2,635,962 – 2,636,082 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.67 |
| Mean single sequence MFE | -41.66 |
| Consensus MFE | -37.62 |
| Energy contribution | -38.62 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.90 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2635962 120 - 27905053 UUAAAGAAGUGGCGCCGAGUGCUGGGAACCUCGACUGGCGACAGCGAUCCAGGUCGGGAGCUUAGCAAGGCGACUCACUGAUUGAUUUCAGUGCAAACAGAAGACUUCGCAGCUAGCACC .....(((((((((((...(((((((..((.(((((((((....))..))).))))))..))))))).)))).))((((((......))))))..........)))))((.....))... ( -43.20) >DroSec_CAF1 36284 120 - 1 UUAAAGAAGUGCCGCCGAGUGCUGGGAACCUCGACUGGCGACAGCGAUCCAGGUCGGGAGCUUAGCAAGGCGACUCACUGAUUGAUUUCAGUGCAAACAGAAGACUUCGCAGCUAGCACC .....(((((..((((...(((((((..((.(((((((((....))..))).))))))..))))))).))))...((((((......))))))..........)))))((.....))... ( -43.10) >DroSim_CAF1 24500 120 - 1 UUAAAGAAGUGGCGCCGAGUGCUGGGAACCUCGACUGGCGACAGCGAUCCAGGUCGGGAGCUUAGCAAGGCGACUCACUGAUUGAUUUCAGUGCAAACAGAAGACUUCGCAGCUAGCACC .....(((((((((((...(((((((..((.(((((((((....))..))).))))))..))))))).)))).))((((((......))))))..........)))))((.....))... ( -43.20) >DroEre_CAF1 26987 120 - 1 UUAAAGAAGUGGCGCCGAGUGCUGGGAACCUCGACUGGCGACAGCGAUCCAGGUCGGGAGCUUAGCAAGGCGACUCACUGAUUGAUUUCAGUGCAAACAGAGGACUCCGGAGCUAACACC .........(((((((...(((((((..((.(((((((((....))..))).))))))..))))))).)))....((((((......))))))..................))))..... ( -38.80) >DroYak_CAF1 17948 120 - 1 UUAAAGAAGUGGCGCCGAGGACUGGGAACCUCGACUGGCGACAGCGAUCCAGGUCGGGAGCUUAGCAAGGCGACUCACUGAUUGAUUUCAGUGCAAACAGCAGACCCCGGAGCUAGCACC .........((((.(((.((.(((((....(((.(((....)))))))))))(((((..((((....))))..))((((((......)))))).........)))))))).))))..... ( -40.00) >consensus UUAAAGAAGUGGCGCCGAGUGCUGGGAACCUCGACUGGCGACAGCGAUCCAGGUCGGGAGCUUAGCAAGGCGACUCACUGAUUGAUUUCAGUGCAAACAGAAGACUUCGCAGCUAGCACC .....(((((..((((...(((((((..((.(((((((((....))..))).))))))..))))))).))))...((((((......))))))..........)))))............ (-37.62 = -38.62 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:57 2006