Locus 7447

Sequence ID 3R_DroMel_CAF1
Location 19,836,664 – 19,836,760
Length 96
Max. P 0.633947
window12041

overview

Window 1

Location 19,836,664 – 19,836,760
Length 96
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 88.18
Mean single sequence MFE -24.53
Consensus MFE -16.71
Energy contribution -17.27
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -2.60
Structure conservation index 0.68
SVM decision value 0.21
SVM RNA-class probability 0.633947
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19836664 96 + 27905053
UAUAUGUAUAUACCAUUAGGUCCAUAUUGUCAGCAAUAUGGUUGCAAAUUGGUUUAUUUACUUGAGUGAAUCAAGG---------UAUAAAGGAGAUAUCCUAUG
........((((((.....((((((((((....))))))))..))...(((((((((((....)))))))))))))---------)))).((((....))))... ( -28.20)
>DroSec_CAF1 14925 103 + 1
UA--UAUAUAUACCAUUAGUUCCAUAUUGUCAACAGAAUGGUUGCAAAUUGGUUUAUUUACUUGAGUGAAUCGAGGUGAAACAGAUAUAAAGGAGAUAUCCUAUG
((--(((...((((....((.((((.(((....))).))))..))...(((((((((((....)))))))))))))))......))))).((((....))))... ( -22.30)
>DroSim_CAF1 21281 103 + 1
UA--UAUAUAUACCAUUAGUUCCAUAUUGUCAACAGAAUGGUUGCAAAUUGGUUUAUUUACUUGAGUGAAUCAAGGUGCAACAGAUAUAAAGAAGAUAUCCUAUG
..--..................(((.(((....))).)))((((((..(((((((((((....)))))))))))..)))))).(((((.......)))))..... ( -23.10)
>consensus
UA__UAUAUAUACCAUUAGUUCCAUAUUGUCAACAGAAUGGUUGCAAAUUGGUUUAUUUACUUGAGUGAAUCAAGGUG_AACAGAUAUAAAGGAGAUAUCCUAUG
..........((((.......((((.(((....))).)))).......(((((((((((....)))))))))))))))............((((....))))... (-16.71 = -17.27 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:16 2006