Locus 7445

Sequence ID 3R_DroMel_CAF1
Location 19,832,356 – 19,832,450
Length 94
Max. P 0.513001
window12037

overview

Window 7

Location 19,832,356 – 19,832,450
Length 94
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 87.95
Mean single sequence MFE -20.19
Consensus MFE -14.56
Energy contribution -15.56
Covariance contribution 1.00
Combinations/Pair 1.11
Mean z-score -1.60
Structure conservation index 0.72
SVM decision value -0.04
SVM RNA-class probability 0.513001
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19832356 94 - 27905053
CUAUAUUUAGCCAGAAACAAGCCAAGUGGGCAGAACUGCACCCCACUCU-----UUCGCUCCCACUGGCCCCACUCUGCCGCG--GUCUCUCUCUUUCACA
.........((((((.....((((.(((((..(((..............-----)))...))))))))).....))))..)).--................ ( -19.34)
>DroSec_CAF1 10603 99 - 1
CUAUAUUUAGCCAGAAACAAGCCAAGUGGGCGGCACUGCACCCCACUCUCCCUCUUCGCUCCCACUGGCCCCACUCUGCCGCG--CUCUCUCUCUUUCACA
.........((((((.....((((.(((((.(((.......................)))))))))))).....))))..)).--................ ( -21.20)
>DroSim_CAF1 15309 101 - 1
CUAUAUUUAGCCAGAAACAAGCCAAGUGGGCGGCACUGCACCCCACUCUCCCUCUUCGCUCCCACUGGCCCCACUCUGCCGCGUACUCUCUCUCUUUCACA
.........((((((.....((((.(((((.(((.......................)))))))))))).....))))..))................... ( -21.20)
>DroEre_CAF1 10666 90 - 1
AUAUAUUUAGCCAGAAACAAGCUAAAAGGGCGGCACUGCACCCCACUCU-----UUCGCUCCCACUGUCCCCACUCUGGCGCG------CUCUCUUUCACA
.........((((((....(((..((((((.((.........)).))))-----)).)))......((....))))))))...------............ ( -16.50)
>DroYak_CAF1 10662 90 - 1
CUAUAUUUAGCCAGAAAGAAGCCAAAUGGGCAGCACUGCACCCCACUCU-----CUCGCUCCCACUGGCCCCACUGCGGCGCG------CUCUCUUUCACA
.............(((((((((....((((..((...))..))))....-----...((.((((.((....)).)).)).)))------)).))))))... ( -22.70)
>consensus
CUAUAUUUAGCCAGAAACAAGCCAAGUGGGCGGCACUGCACCCCACUCU_____UUCGCUCCCACUGGCCCCACUCUGCCGCG___UCUCUCUCUUUCACA
.........((((((.....((((.(((((.(((.......................)))))))))))).....))))..))................... (-14.56 = -15.56 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:12 2006