Locus 7443

Sequence ID 3R_DroMel_CAF1
Location 19,825,874 – 19,825,976
Length 102
Max. P 0.692940
window12034

overview

Window 4

Location 19,825,874 – 19,825,976
Length 102
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 81.13
Mean single sequence MFE -37.45
Consensus MFE -30.02
Energy contribution -30.88
Covariance contribution 0.86
Combinations/Pair 1.10
Mean z-score -1.41
Structure conservation index 0.80
SVM decision value 0.33
SVM RNA-class probability 0.692940
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19825874 102 - 27905053
GCCGGCCUUCGUGCCGCAAAACACUGCCGAGGUCAAGGCGGUGCUGCAGGCGCUCAUGGCCAAGAUCCAGAAGUAGUAUGUGUUUG--CUUUCUAU----------CAU-CAAAU
...((((...((((((((...(((((((........))))))).))).)))))....))))..(((...(((((((.......)))--))))..))----------)..-..... ( -37.70)
>DroSec_CAF1 4110 112 - 1
GCCGGCCUUCGUGCCGCAGAACACUGCCGAGGUCAAGGCGGUGCUGCAGGCGCUCAUGGCCAAGAUCCAGAAGUAGUAAGUGUUUG--CUUUCAAAUGCAA-UUUUAAUGCAAAU
...((((...(((((((((..(((((((........))))))))))).)))))....))))...........(((.((((...(((--(........))))-.)))).))).... ( -41.70)
>DroEre_CAF1 4116 102 - 1
GCCGGCCUUCGUGCCGCAGAACACUGCCGAGGUCAAGGCGGUGCUCCAGGCGCUCAUGGCCAAGAUCCAGAAGUAGUAAGUGCUCG--CGUUCUAUCA----------U-CAAAG
...((((...(((((...((.(((((((........))))))).))..)))))....))))..(((..(((((((((....))).)--).))))...)----------)-).... ( -36.40)
>DroWil_CAF1 9207 114 - 1
GCCGGCCUUUGUGCCGCAAAACACGGCCGAGGUUAAGGCCGUGCUGCAGGCUCUAAUGGCCAAGAUCCAGAAGUAGUAAGUACUAGGCCGUUCUUGUUCCUUCUCUUAU-CCCGU
...((((...(.((((((...(((((((........))))))).))).))).)....))))..(((..(((((.((((((.((......)).)))))).)))))...))-).... ( -39.30)
>DroYak_CAF1 4130 105 - 1
GCCGGCCUUCGUGCCGCAGAACACUGCCGAGGUCAAGGCGGUGCUCCAGGCGCUCAUGGCCAAGAUCCAGAAGUAGUAAGUGUUCG--CGUUCUAUCA-------UCAU-CACAU
...((((...(((((...((.(((((((........))))))).))..)))))....))))........((.((((...((....)--)...))))..-------))..-..... ( -35.20)
>DroAna_CAF1 4179 101 - 1
GCCGGCCUUCGUGCCGCAGAACACGGCCGAGGUCAAGGCGGUAUUGCAGGCGCUUAUGGCCAAGAUCCAGAAGUAGUAAGUGUUC---CUUUCACAUCUCU-----------UCU
...((((...(((((((((...((.(((........))).)).)))).)))))....)))).......(((((.((...(((...---....)))..))))-----------))) ( -34.40)
>consensus
GCCGGCCUUCGUGCCGCAGAACACUGCCGAGGUCAAGGCGGUGCUGCAGGCGCUCAUGGCCAAGAUCCAGAAGUAGUAAGUGUUCG__CGUUCUAUUA_________AU_CAAAU
...((((...(((((((((..(((((((........))))))))))).)))))....))))...................................................... (-30.02 = -30.88 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:09 2006