Locus 7438

Sequence ID 3R_DroMel_CAF1
Location 19,803,242 – 19,803,351
Length 109
Max. P 0.561762
window12025

overview

Window 5

Location 19,803,242 – 19,803,351
Length 109
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 77.81
Mean single sequence MFE -35.78
Consensus MFE -22.16
Energy contribution -21.47
Covariance contribution -0.69
Combinations/Pair 1.41
Mean z-score -1.37
Structure conservation index 0.62
SVM decision value 0.06
SVM RNA-class probability 0.561762
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19803242 109 + 27905053
GGUUGCCAGGGAUUGGAGCUGAUCUCCAGCUUCAGGAAACUGCUGAAUCCCUACCAGGUAUUCGAUCUGGAUAAUGGCGGUCCUUUGCCUGGGUACGUUCAACCUAUAA
(((((..((((((((((((((.....)))))))((....))....))))))).(((((((...((((...........))))...))))))).......)))))..... ( -41.90)
>DroVir_CAF1 36936 108 + 1
GGCUGUCAGGGCCUCGAACUAAUAUCGAGCUUUAGGAAACUACUGAAUCCGUAUCAGGUCUUUGACCUGGAUAACGGAGGUCCGCUGCCAGGGUGAGUUAACCUGAAA-
(((.((..(((((((((.......)))).(..(((....)))..)..(((((.(((((((...)))))))...)))))))))))).))).((((......))))....- ( -38.60)
>DroPse_CAF1 36780 108 + 1
GGUUGCCAGGGCCUGGAGCUGAUCUCGAGCUUCAGGAAGCUGCUGAAUCCCUAUCAGGUUUUCGAUCUGGACAAUGGAGGUCCUCUGCCAGGGUAAAUCCAAGCCAG-C
((((.(((((.(((((((((.......))))))))).......((((..((.....))..)))).)))))....((((...(((......)))....))))))))..-. ( -36.00)
>DroWil_CAF1 37384 105 + 1
GGAUGCCAGGGUCUUGAAUUAAUAUCGAGCUUUAGGAAACUGCUGAAUCCGUAUCAAGUUUUUGACUUGGACAACGGUGGACCAUUGCCGGGGUAAAGCCUA----GAC
((((..(((((.(((((.......))))))).(((....)))))).))))((.(((((((...)))))))))..(((..(....)..)))(((.....))).----... ( -28.40)
>DroAna_CAF1 35613 99 + 1
GGCUGCCAGGGCCUGGAGCUGAUCUCCAGCUUCAGGAAGCUUUUGAAUCCGUAUCAGGUCUUCGAUUUGGACAAUGGGGGUCCUCUUCCAGGGUAAAUU----------
((((.......((((((((((.....)))))))))).)))).....((((((.(((((((...)))))))))..((((((....)))))))))).....---------- ( -33.80)
>DroPer_CAF1 37180 108 + 1
GGUUGCCAGGGCCUGGAGCUGAUCUCGAGCUUCAGGAAGCUGCUGAAUCCCUAUCAGGUUUUCGAUCUGGACAAUGGAGGUCCUCUGCCAGGGUAAAUCCAAACCAG-C
((((.(((((.(((((((((.......))))))))).......((((..((.....))..)))).)))))....((((...(((......)))....))))))))..-. ( -36.00)
>consensus
GGUUGCCAGGGCCUGGAGCUGAUCUCGAGCUUCAGGAAACUGCUGAAUCCCUAUCAGGUUUUCGAUCUGGACAAUGGAGGUCCUCUGCCAGGGUAAAUCCAA_C_AG_C
....((.((..(((((((((.......)))))))))...))))...((((...(((((((...))))))).....((..(....)..)).))))............... (-22.16 = -21.47 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:00 2006