Locus 7437

Sequence ID 3R_DroMel_CAF1
Location 19,802,877 – 19,802,997
Length 120
Max. P 0.645477
window12024

overview

Window 4

Location 19,802,877 – 19,802,997
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 85.67
Mean single sequence MFE -41.57
Consensus MFE -32.24
Energy contribution -30.63
Covariance contribution -1.60
Combinations/Pair 1.43
Mean z-score -2.19
Structure conservation index 0.78
SVM decision value 0.23
SVM RNA-class probability 0.645477
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19802877 120 - 27905053
UCGUAGUAGAUGGGUCCGAUGCUGAUGAACUUAUUUUCGUCGGUUACGUACUUGUUGAGGAUCUGCUCGUAGUUGCGCUGCGAGAGACCGGUGGGCAGAUUGCCCACGAACAGCGCGAUA
((((.......((((.((..(((((((((......)))))))))..)).))))((((.((.(((.(((((((.....)))))))))))).((((((.....))))))...)))))))).. ( -48.70)
>DroVir_CAF1 36566 120 - 1
UCGUAGUAGAUGGGUCCAAUGCUGAUGAACUUAUUCUCAUCGGUUACAUAUUUGCUGAGGAUCUGCUCGUAGUUGCGCUGCGAGAGUCCUGUGGGCAGGUUGCCCACAAAGAGCGCAAUG
...(((((((((.((.....((((((((........)))))))).)).)))))))))(((((...(((((((.....))))))).)))))((((((.....))))))............. ( -45.20)
>DroGri_CAF1 38111 120 - 1
UCAUAGUAGAUGGGUCCAAUGCUAAUGAACUUGUUCUCAUCUGUCACGUAUUUGUUCAGAAUCUGUUCGUAGUUGCGCUGCGACAGACCCGUGGGCAGAUUGCCCACGAAUAGGGCAAUG
.....(((((((((..(((..(....)...)))..)))))))).)......((((((....(((((.(((((.....))))))))))..(((((((.....)))))))....)))))).. ( -42.80)
>DroWil_CAF1 37023 120 - 1
UCGUAGUAGAUGGGACCAAUGCUGAUGAACUUGUUCUCGUCCGUGACAUACUUGUUGAGAAUCUGCUCAUAAUUUCUCUGUGAGAGUCCAGUGGGUAGAUUACCCACAAAGAGGGCAAUA
((((((((..((....)).)))).))))..(((((((((((...)))....((((.(..(((((((((((...(((((...)))))....)))))))))))..).)))).)))))))).. ( -35.10)
>DroMoj_CAF1 39745 120 - 1
UCAUAGUAAAUGGGUCCAAUGCUGAUGAAUUUGUUCUCAUCAGUCACAUAUUUGUUUAAAAUUUGCUCGUAGUUGCGCUGCGAGAGUCCUGUGGGCAGGUUGCCCACAAAGAGCGCAAUG
....(((((((..(..((((((((((((........))))))).)).....)))..)...)))))))....((((((((((....))..(((((((.....)))))))...)))))))). ( -39.90)
>DroAna_CAF1 35248 120 - 1
UCAUAGUAGAUGGGUCCAAUGCUAGUGAACUUGUUCUCGUCGGUCACAUACUUGUUGAGGAUCUGCUCGUAGUUGCGCUGCGAGAGUCCUGUGGGUAGAUUGCCCACGAAUAGCGCGAUA
........((((((..(((..(....)...)))..)))))).(((.(..........(((((...(((((((.....))))))).)))))((((((.....)))))).......).))). ( -37.70)
>consensus
UCAUAGUAGAUGGGUCCAAUGCUGAUGAACUUGUUCUCAUCGGUCACAUACUUGUUGAGAAUCUGCUCGUAGUUGCGCUGCGAGAGUCCUGUGGGCAGAUUGCCCACAAAGAGCGCAAUA
...(((((..((....)).)))))((((.(..(((((((.(((........))).)))))))..).)))).((((((((.(....)....((((((.....))))))....)))))))). (-32.24 = -30.63 +  -1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:59 2006